arXiv:2601.07871v2 Announce Type: replace-cross
Abstract: Cardiovascular disease arises from interactions between inherited risk, molecular programmes, and tissue-scale remodelling that are observed...
By Minh H. N. Le, Tuan Vinh, Thanh-Huy Nguyen, Tao Li, Bao Quang Gia Le, Han H. Huynh, Monika Raj, Carl Yang, Min Xu, Nguyen Quoc Khanh Le
arXiv:2606. 28179v1 Announce Type: cross Abstract: Identifying robust associations between cardiac imaging phenotypes and clinical diseases is fundamental to population-scale cardiovascular research and reliable risk stratification.
By Zuoou Li, Wenlong Zhao, Kelly Yu, Weitong Zhang, Paul M. Matthews, Wenjia Bai, Bernhard Kainz, Mengyun Qiao
arXiv:2603. 13432v4 Announce Type: replace-cross Abstract: Spatial Transcriptomics (ST) profiles thousands of gene expression values at discrete spots with precise coordinates on tissue sections, preserving spatial context essential for clinical and pathological studies.
By Yishun Zhu, Jiaxin Qi, Jian Wang, Yuhua Zheng, Jianqiang Huang
arXiv:2607. 14410v1 Announce Type: new Abstract: Spatially resolved omics studies increasingly combine transcriptomic and epigenomic assays, yet downstream analysis is often still performed using single-modality pipelines.
By Jagan Mohan Reddy Dwarampudi, Veena Kochat, Suresh Satpati, Kunal Rai, Tania Banerjee
The paper introduces BCARP, a Biology‑Guided Context‑Aware Residual Propagation framework that predicts spatial gene expression from H&E‑stained histology images. Rather than directly decoding expression from visual features, BCARP treats histology embeddings as morphological priors and iteratively refines spot representations in a transcriptomics‑oriented latent space, integrating nuclei‑guided local context and prototype‑guided global propagation. Evaluations on three spatial transcriptomics datasets and ten HEST‑1k cohorts show that BCARP outperforms existing baselines in mean correlation‑based metrics, demonstrating the effectiveness of biology‑guided local‑global residual propagation for histology‑to‑transcriptomics prediction.
By Vu Van An, Long D. Nguyen, Ho Viet Duc Luong, Binh P. Nguyen
arXiv:2608. 14924v1 Announce Type: cross Abstract: Spatial transcriptomics (ST) links tissue morphology with molecular programs, motivating multimodal pretraining methods that align histology images with gene expression.
By Azim Dehghani Amirabad, Junchao Zhu, Pushpak Pati, Walid Abdelmoula, Tommaso Mansi, Rui Liao