arXiv AI By Xingjian Zhang, Sophia Moylan, Ziyang Xiong, Qiaozhu Mei, Yichen Luo, Jiaqi W. Ma

FlyAOC: Evaluating Agentic Ontology Curation of Drosophila Scientific Knowledge Bases

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FlyAOC is a benchmark that tests AI agents on end‑to‑end ontology curation of Drosophila scientific literature. Given a gene symbol, a brief description, a large paper corpus, and ontology resources, agents must search for evidence and produce structured annotations such as function terms, expression patterns, and historical synonyms. The benchmark contains 7,397 expert‑curated annotations across 100 genes and evaluates different agent harnesses, revealing system‑level failure modes that single‑task evaluations miss.

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