arXiv:2608. 04144v1 Announce Type: cross Abstract: Biomedical entity linking grounds mentions in clinical and scientific text to entities in a curated knowledge base (KB) with ontological structure, which supports downstream applications such as literature-scale information extraction and patient-record normalization.
By Yicheng Tao, Jie Liu
arXiv:2608. 16005v1 Announce Type: new Abstract: This paper studies the problem of molecule-text alignment, which aims to project molecules and their textual descriptions into a joint latent space for downstream tasks including molecule search and molecular property prediction.
By Shunshun Gu, Shengqi Qiu, Hang Zhou, Xiao Luo
arXiv:2607. 08803v1 Announce Type: cross Abstract: The push toward large language models for biology (BioLM) has created a need for training corpora that can endow models with a genuine understanding of biology.
By Hyunjin Seo, Hyeon Hwang, Gyubok Lee, Jay Shin, Jimin Park, Taesoo Kim, Sanghoon Lee, Hongjoon Ahn, Sungjun Han, Sangwon Jung
arXiv:2606. 06696v1 Announce Type: cross Abstract: Vision and language models (VLMs) hold immense promise to transform biomedical imaging workflows, from detecting lesions in chest X-rays to profiling cellular features in microscopy.
By Ryan D'Cunha, Alejandro Lozano, Xiaoxiao Sun, Daniel Vela Jarquin, Min Woo Sun, Josiah Aklilu, James Burgess, Yuhui Zhang, Ryan Nayebi, Paola Avila, Robayo, Jin Ye, Ming Hu, Zhongying Deng, Junjun He, Xin Chen, Yue Yao, Robert Tibshirani, Jeffrey J. Nirschl, Serena Yeung-Levy
arXiv:2402. 01767v3 Announce Type: replace-cross Abstract: Retrieval-augmented generation (RAG) has rapidly advanced the language model field, particularly in question-answering (QA) systems.
By Xinyue Chen, Pengyu Gao, Jiangjiang Song, Xiaoyang Tan
arXiv:2608. 00065v1 Announce Type: cross Abstract: Terminology-intensive retrieval, especially in medical settings, depends on preserving multi-word entities, abbreviations, numerical constraints, and compositional concepts.
By Shusen Zhang, Junyi Hu, Ye Feng, Ziteng Wang, Zhaoyuan Pan, Guosheng Dong, Xiaojun Yuan, Jiangshou Hong, Xiangzhi Wang