arXiv:2604. 17324v2 Announce Type: replace-cross Abstract: Global self-attention drives modern graph transformers, yet the softmax at its core imposes a structural constraint rarely examined directly: every attention row is non-negative and sums to one, so each per-head output is a mass-conserving convex combination of value vectors.
arXiv:2606. 03712v1 Announce Type: new Abstract: Graph Language Models (GLMs) have become a promising direction for adapting Large Language Models (LLMs) to graph learning tasks.
arXiv:2605.10247v2 Announce Type: replace Abstract: Applying Large Language Models (LLMs) to graph-structured data usually involves multi-step pipelines in which textual node attributes are compresse...
The paper investigates how the choice of graph tokenization affects transformer expressivity. It analyzes three tokenization families—spectral, random‑walk, and adjacency—showing that each induces different depth requirements and that some tokenizations are inherently lossy or ill‑conditioned for certain tasks. The authors prove lower bounds and impossibility results for converting between tokenizations and validate these findings with experiments on synthetic and real‑world data.
The paper shows that a plain Transformer can serve as an effective graph learner by adding three lightweight modifications: simplified L₂ attention, adaptive RMS normalization, and an MLP-based positional encoding stem. These changes preserve token magnitude and enable the model to achieve high expressivity on graph benchmarks, outperforming more complex graph transformer variants. The results suggest that plain Transformers can act as a unified backbone for multimodal learning across language, vision, and graph domains.
arXiv:2606. 19150v1 Announce Type: new Abstract: The remarkable success of Transformer-based models in natural language processing stems from architectural scaling, which leads to a large number of parameters and hinders deployment in resource-constrained environments.
arXiv:2607. 17570v1 Announce Type: new Abstract: Graph foundation models (GFMs) with global attention are increasingly used to represent mixed-integer linear programs (MILPs), aiming to capture structure beyond the locality of standard graph neural networks.
arXiv:2607. 01553v1 Announce Type: cross Abstract: Transformers have become general-purpose architectures, but their all-to-all self-attention is poorly matched to graph data, whose interactions are sparse, structured and multi-scale.
HyPE-GT introduces a framework that generates learnable hyperbolic positional encodings for Graph Transformers, enabling the capture of complex hierarchical relationships in graph-structured data. Unlike traditional Euclidean encodings, HyPE’s hyperbolic encodings can be selected to suit specific downstream tasks and help mitigate oversmoothing in deep Graph Neural Networks. Experiments on molecular benchmarks and large-scale Open Graph Benchmark datasets demonstrate improved performance, while additional tests on Coauthor and Copurchase networks confirm HyPE’s effectiveness in controlling oversmoothing.
arXiv:2510. 05554v2 Announce Type: replace Abstract: As large language models scale to longer contexts, attention layers suffer from a fundamental pathology: attention scores collapse toward uniformity as context length $n$ increases, causing tokens to cluster excessively, a phenomenon known as rank-collapse.
arXiv:2606. 15633v2 Announce Type: replace Abstract: Large Language Models (LLMs) have shown promise for reasoning over Text-Attributed Graphs (TAGs).
arXiv:2606. 14476v1 Announce Type: new Abstract: A growing line of work equips large language model (LLM) agents with graph neural networks (GNNs) as callable tools, assuming the agent exercises judgment over when and how much to rely on such a tool.