arXiv:2502. 16533v3 Announce Type: replace-cross Abstract: Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-smoothing and over-squashing.
By Chaohao Yuan, Kangfei Zhao, Ercan Engin Kuruoglu, Liang Wang, Tingyang Xu, Wenbing Huang, Deli Zhao, Hong Cheng, Yu Rong
arXiv:2607. 01553v1 Announce Type: cross Abstract: Transformers have become general-purpose architectures, but their all-to-all self-attention is poorly matched to graph data, whose interactions are sparse, structured and multi-scale.
By Leyan Li, Rennong Yang, Zhenxing Zhang, Liping Hu
arXiv:2605.10247v2 Announce Type: replace
Abstract: Applying Large Language Models (LLMs) to graph-structured data usually involves multi-step pipelines in which textual node attributes are compresse...
By Dario Vajda
arXiv:2602. 01553v3 Announce Type: replace-cross Abstract: Link prediction is a core challenge in graph machine learning, demanding models that capture rich and complex topological dependencies.
By Quang Truong, Yu Song, Donald Loveland, Mingxuan Ju, Tong Zhao, Neil Shah, Jiliang Tang
The paper investigates Graph Transformers (GTs) that use Graph Neural Network (GNN)-based positional encodings. By analyzing GTs through manifold limit models, the authors establish a theoretical link between GTs and Manifold Neural Networks (MNNs), showing that GTs inherit transferability guarantees from their positional encodings. Experiments on standard graph benchmarks confirm that GTs scale comparably to GNNs, and a real‑world shortest‑path estimation task demonstrates their practical efficiency on large terrains.
By Javier Porras-Valenzuela, Zhiyang Wang, Teresa Shang, Yusu Wang, Alejandro Ribeiro
arXiv:2509. 22259v4 Announce Type: replace-cross Abstract: We study the extent to which rotary position encodings (RoPE), a recent transformer position encoding algorithm broadly adopted in large language models (LLMs) and vision transformers (ViTs), can be applied to graph-structured data.
By Isaac Reid, Arijit Sehanobish, Cederik H\"ofs, Bruno Mlodozeniec, Leonhard Vulpius, Federico Barbero, Adrian Weller, Krzysztof Choromanski, Richard E. Turner, Petar Veli\v{c}kovi\'c