arXiv Machine Learning

Learning Generalizable Reconstruction of High-Dimensional Neural Dynamics

arXiv:2608. 16569v1 Announce Type: new Abstract: Accurate reconstruction of long-duration neural recordings is challenging because local field potentials (LFPs) are high-resolution, multichannel, transient, and variable across subjects.

arXiv Computer Vision
Oct 9

Hankel Subspace Self-Supervised Learning for Parallel MRI Reconstruction

Hankel Subspace Self‑Supervised Reconstruction (HSSRecon) is a scan‑specific framework for parallel MRI that partitions data by acquisition units before Hankel lifting and normalizes repeated Hankel copies. Instead of predicting missing k‑space directly, the network learns a compact complex‑valued Hankel subspace operator, and reconstruction is performed with a conjugate‑gradient solver enforcing hard data consistency. The method provides theoretical guarantees on uniqueness and error bounds, and demonstrates competitive performance on fastMRI brain data across multiple contrasts and sampling masks.

By Mingyu Hu, Siquan Zhu, Xijun Zhong, Qiegen Liu
arXiv Machine Learning
Sep 21

BrainWideBench: Benchmarking large-scale pretraining and across-animal transfer in multi-region neural recordings

BrainWideBench is a benchmark that evaluates across‑animal transfer on multi‑region neural recordings from 139 mice, covering 276 brain regions. It comprises three task suites—behavior decoding, neural activity prediction, and anatomical organization recovery—to test whether learned representations support diverse downstream objectives. The benchmark shows that while pretraining improves performance over single‑session baselines, current methods vary in transfer ability and none perform uniformly well across all suites, highlighting the challenge of developing general‑purpose neural representations.

By Alexandre Andre, Shivashriganesh P. Mahato, Vinam Arora, Keshav Balaji, Divyansha Lachi, Nanda H. Krishna, Jingyun Xiao, Yizi Zhang, Ximeng Mao, Wenrui Ma, Han Yu, International Brain Laboratory, Daniel Birman, Niccol\`o Bonacchi, Gaelle A. Chapuis, Joana A. Catarino, Felicia Davatolhagh, Mayo Faulkner, Laura Freitas-Silva, Fei Hu, Julia M. Huntenburg, Anup Khanal, In\^es Laranjeira, Petrina Lau, Guido T. Meijer, Nathaniel J. Miska, Jean-Paul Noel, Alejandro Pan-Vazquez, Georg Raiser, Cyrille Rossant, Karolina Z. Socha, Anne E. Urai, Miles J. Wells, Steven J. West, Olivier Winter, Blake Richards, Guillaume Lajoie, Cole Hurwitz, Mehdi Azabou, Matthew R. Whiteway, Liam Paninski, Eva L. Dyer
Hugging Face Trending Papers
Oct 8

Hankel Subspace Self-Supervised Learning for Parallel MRI Reconstruction

Hankel Subspace Self-Supervised Reconstruction (HSSRecon) is a scan‑specific framework for parallel MRI that partitions data by acquisition units before Hankel lifting and normalizes repeated Hankel copies. Instead of directly predicting missing k‑space data, the network learns a compact complex‑valued Hankel subspace operator, and reconstruction is performed with a conjugate‑gradient solver enforcing hard data consistency. The method is theoretically justified with proofs of positive definiteness, uniqueness, and error bounds, and demonstrates competitive performance on fastMRI brain data across multiple contrasts and sampling masks.

arXiv AI
Jun 8

LuMamba: Latent Unified Mamba for Electrode Topology-Invariant and Efficient EEG Modeling

arXiv:2603. 19100v2 Announce Type: replace Abstract: Electroencephalography (EEG) enables non-invasive monitoring of brain activity across clinical and neurotechnology applications, yet building foundation models for EEG remains challenging due to differing electrode topologies and computational scalability, as Transformer architectures incur quadratic sequence complexity.

By Dana\'e Broustail, Anna Tegon, Thorir Mar Ingolfsson, Yawei Li, Luca Benini
arXiv AI
Aug 19

Harnessing Magnitude-Only and Complex Measurements for Improved Dynamic MRI Reconstruction with Learned Priors

The paper introduces τ+C+Mag, a physics‑driven deep learning method that incorporates auxiliary k‑space magnitude information into accelerated steady‑state dynamic MRI reconstruction. By observing strong consistency of k‑space magnitudes across time‑frames, the authors develop an ADMM‑based unrolling framework with a magnitude‑aware data‑fidelity term, using quadratically smoothed optimization and momentum updates to handle non‑differentiability and non‑convexity. Experiments on retrospectively and prospectively undersampled cine and phase‑contrast flow MRI datasets show improved artifact suppression, sharper anatomical detail, and better phase preservation compared to conventional PD‑DL approaches, as confirmed by blinded expert readers.

By Mahdi Saberi, Ya\c{s}ar Utku Al\c{c}alar, Merve G\"{u}lle, Chetan Shenoy, Mehmet Ak\c{c}akaya
arXiv Computer Vision
4d ago

Stochastic Finite-Transition Learning and Exploration for Accelerated MRI Reconstruction

The paper introduces FLEX‑MRI, a method that accelerates MRI reconstruction by partitioning the recovery process into a few finite intervals defined by progressive k‑space support changes. Instead of learning fine‑grained local dynamics, FLEX‑MRI directly learns the reconstruction change across each interval and employs stochastic exploration during inference to sample alternative transition paths. Experiments on multi‑coil MRI datasets demonstrate that FLEX‑MRI outperforms competing methods while keeping computational efficiency comparable to few‑step baselines.

By Muhammad Usama Mirza, Esin \"Ozt\"urk I\c{s}{\i}k, Tolga \c{C}ukur
arXiv Machine Learning
Jun 3

Correcting Neural Operator Spectral Bias via Diffusion Posterior Sampling with Sparse Observations

arXiv:2606. 03936v1 Announce Type: new Abstract: Neural operator surrogates (NO) approximate PDE solutions orders of magnitude faster than numerical solvers, but suffer from spectral bias: high-frequency content is systematically attenuated, limiting reliability where fine-scale structure matters.

By Niccol\`o Perrone, Fanny Lehmann, Stefania Fresca, Filippo Gatti
Hugging Face Trending Papers
Jul 7

PhyMRI-SR: Toward Physics-Aware MRI Image Super-Resolution

Magnetic resonance imaging (MRI) super-resolution is vital for improving diagnostic accessibility, yet most methods treat it as a deterministic mapping from a fixed low-resolution input to a high-resolution target. This overlooks a key property of MRI acquisition physics: spatial resolution and signal-to-noise ratio (SNR) are inherently coupled, making any given low-resolution scan merely one of many possible realizations under varying acquisition trade-offs.