arXiv Machine Learning

Learning Representations from Incomplete EHR Data with Dual-Masked Autoencoding

arXiv:2602. 15159v2 Announce Type: replace Abstract: Electronic health records (EHR) arrive masked.

arXiv Machine Learning

Jul 27

Autoregressive EHR Foundation Models with Multimodal Inputs

arXiv:2607. 22264v1 Announce Type: new Abstract: Autoregressive foundation models trained on tokenized electronic health records (EHRs) can support zero-shot clinical prediction, yet most operate on structured event codes alone, and do not incorporate multiple modalities in a principled way.

By Yuxuan Liu, Joshua Placidi, Jinpei Han, Alfred John Balston, Marek Rei, A. Aldo Faisal

multimodal safety

arXiv AI

Jun 16

CAP: Towards PPG Universal Representation Learning with Patient-level Supervision

arXiv:2606. 15284v1 Announce Type: cross Abstract: Photoplethysmography (PPG) plays a central role in wearable health monitoring and clinical decision support.

By Chenyang He, Xinyi Shao, Shun Huang, Bosong Huang, Daoqiang Zhang, Ming Jing, Cheng Ding

multimodal benchmarks safety

arXiv Machine Learning

Aug 12

GARLIC: Graph Attention-based Relational Learning of Multivariate Time Series in Intensive Care

arXiv:2608. 10969v1 Announce Type: new Abstract: Healthcare data, such as Intensive Care Unit (ICU) records, comprise heterogeneous multivariate time series sampled at irregular intervals with pervasive missingness.

By Ruirui Wang, Yanke Li, Manuel G\"unther, Diego Paez-Granados

benchmarks

arXiv Machine Learning

Jun 5

PAMF: Prior-Aware Multimodal Fusion for Incomplete Time Series Data

arXiv:2606. 06328v1 Announce Type: new Abstract: In healthcare, multimodal time series tasks often operate on incomplete observations in practice, for example when ECG segments are lost because electrodes detach or an entire respiratory channel is unavailable during overnight monitoring.

By Ziwen Kan, Wugeng Zheng, Tianlong Chen, Song Wang

rag diffusion multimodal benchmarks

arXiv Machine Learning

Jul 21

A Framework for Early Sepsis Prediction via Self-Supervised (JEPA) and Federated Representation Learning

arXiv:2607. 16681v1 Announce Type: new Abstract: Early sepsis prediction from electronic health records is challenged by irregular sampling, high missingness, and class imbalance.

By Umair bin Mansoor, Munaf Rashid, Roomi Naqvi

rag fine-tuning efficiency benchmarks

arXiv Machine Learning

Jun 24

HyMaTE: A Hybrid Mamba and Transformer Model for EHR Representation Learning

arXiv:2509. 24118v2 Announce Type: replace Abstract: Electronic health Records (EHRs) have become a cornerstone in modern-day healthcare.

By Md Mozaharul Mottalib, Thao-Ly T. Phan, Rahmatollah Beheshti

llms efficiency safety

arXiv Machine Learning

Jun 2

PaCX-MAE: Physiology-Augmented Chest X-Ray Masked Autoencoder

arXiv:2606. 01537v1 Announce Type: cross Abstract: Clinical diagnosis often requires combining imaging with physiological measurements, yet deployed models typically operate on unimodal data.

By Yancheng Liu, Kenichi Maeda, Manan Pancholy

rag computer-vision efficiency multimodal benchmarks

arXiv Machine Learning

Jul 20

LLM4EHR: Aligning Clinical Time Series with Medical Event Sequences via Large Language Models

arXiv:2607. 15447v1 Announce Type: new Abstract: Recent research in clinical machine learning, focusing on outcome predictions in intensive care unit (ICU), has shifted from bespoke supervised models to foundation models, utilising modern representation learning methods.

By Jingteng Li, Alexander Capstick, Louise Rigny, Iona Biggart, Neil J Sebire, Payam Barnaghi

llms rag benchmarks

arXiv Machine Learning

Jul 14

Imputation-free transformer learning enables robust Alzheimer's disease prediction and calibrated uncertainty quantification across heterogeneous clinical cohorts

arXiv:2607. 11656v1 Announce Type: cross Abstract: Accurate diagnostic classification and disease-severity prediction for Alzheimer's disease are hampered by the incompleteness and heterogeneity of real-world clinical data.

By Christelle Schneuwly Diaz, Narmina Baghirova, Duy-Thanh Vu, Duy-Cat Can, Gilles Allali, Philippe Ryvlin, Oliver Y. Ch\'en

llms multimodal safety

arXiv AI

Jul 28

Masked Autoencoders Learn Perception-Relevant Representations from Resting State Neural Data

arXiv:2607. 22615v1 Announce Type: cross Abstract: Clinical neuroprosthetics face a data bottleneck: labeled perception trials are scarce while hours of spontaneous neural activity are largely underutilized.

By Aleksandr Kovalev, Antonio Lozano, Fabrizio Grani, Cristina Soto Sanchez, Leili Soo, Roc\'io L\'opez-Peco, Adrian Villamarin-Ortiz, Roberto Moroll\'on Ruiz, Mar\'ia del Mar Ayuso Arroyave, Alfonso Rodil, Eduardo Fern\'andez

arXiv Machine Learning

Jun 8

One Loss to Rule Them All: Marked Time-to-Event for Structured EHR Foundation Models

arXiv:2602. 00541v2 Announce Type: replace Abstract: Clinical events captured in Electronic Health Records (EHR) are irregularly sampled and may consist of a mixture of discrete events and numerical measurements, such as laboratory values or treatment dosages.

By Zilin Jing, Vincent Jeanselme, Yuta Kobayashi, Simon A. Lee, Chao Pang, Aparajita Kashyap, Yanwei Li, Xinzhuo Jiang, Shalmali Joshi

arXiv AI

Aug 11

FoMoH: A clinically meaningful foundation model evaluation for structured electronic health records

arXiv:2505. 16941v4 Announce Type: replace-cross Abstract: Foundation models (FMs) promise to address core limitations of traditional supervised machine learning: (i) reliance on large amounts of labeled data, (ii) task specificity, and (iii) poor transportability.

By Vincent Jeanselme, Zilin Jing, Aparajita Kashyap, Chao Pang, Florent Pollet, Young Sang Choi, Xinzhuo Jiang, Yuta Kobayashi, Yanwei Li, Sara Matijevic, Karthik Natarajan, Shalmali Joshi

benchmarks safety

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