arXiv:2608. 05179v1 Announce Type: cross Abstract: Large language model (LLM) agents are increasingly used across the scientific research lifecycle: ideation, literature search, experiment design and execution, analysis, manuscript drafting, and review.
By Tianyu Ding, Aditya Nannapaneni, Bingfan Liu, Ling Zhang
arXiv:2606. 05646v1 Announce Type: cross Abstract: Large language models (LLMs) have enabled powerful software engineering (SE) agents capable of navigating complex codebases and resolving real-world issues.
By Xuehang Guo, Zora Zhiruo Wang, Qingyun Wang, Graham Neubig, Xingyao Wang
AgentFold is a multi‑agent framework that treats protein‑folding model design as a closed‑loop search over executable code variants. Starting from the ESMFold codebase, the agents generate hypotheses, modify and debug code, evaluate model variants, and store both successes and failures in structured memory, guided by an MCTS‑style policy that allocates GPU resources. In an engineering‑scale experiment, AgentFold explored about 80 variants using 5,000 GPU‑hours and 170 million LLM tokens, improving the best lDDT score by 7.5% over independent Codex proposals and outperforming a random‑search baseline, while also uncovering empirical design patterns such as the benefits of early, soft, learnable priors.
By Mingquan Liu, Jiangyu Chen, Hanqun Cao, Xujun Zhang, Pengsen Ma, Xiangru Tang, Shuting Jin, Zhuo Yang, Tianfan Fu, Fang Wu, Xiangxiang Zeng
arXiv:2607. 18161v1 Announce Type: cross Abstract: Coding agents are increasingly used to accelerate code generation in many downstream tasks, such as fixing bugs, building applications, and prototyping.
By Alex Mathai, Shobini Iyer, Aleksandr Nogikh, Petros Maniatis, Franjo Ivancic, Junfeng Yang, Baishakhi Ray
AI code agents are increasingly deployed to resolve real software issues, yet their reliability under superficial code variations remains poorly understood. We evaluate whether coding agents that repa...
arXiv:2607. 20499v1 Announce Type: new Abstract: Large Language Models generate plausible backend code, but a single-pass paradigm provides no guarantee of correctness or runtime reliability.
By Sai Deekshith Lekkala, Jothi Prabha Appadurai, Rohith Reddy Bellibatlu, Manpreet Singh
The paper investigates how AI code agents perform when the surrounding code is rewritten in a semantically equivalent way. Using a random variant sampler that applies control‑flow rewrites, dead‑code injection, and identifier renaming, the authors evaluate two agent scaffolds—mini‑SWE agent and OpenCode—backed by four frontier models across SWE‑bench datasets. Results show modest drops in resolve‑rate (up to 6.7 percentage points) with significant degradations in 6 of 16 configurations, and reveal that robustness varies across models and scaffolds, forming a jagged frontier.
By Hasan Najib Mahmud (Colorado State University), Shreya Gupta (Microsoft), Isha Chaudhary (University of Illinois Urbana-Champaign), Nathaniel Enis (Colorado State University), Ravi Mangal (Colorado State University), Gagandeep Singh (University of Illinois Urbana-Champaign), Corina Pasareanu (Carnegie Mellon University)
arXiv:2607. 13091v1 Announce Type: cross Abstract: LLM-based coding agents repeat the same classes of mistakes across sessions because they lack a mechanism to retain corrections from human review feedback.
By Aditya Aggarwal, Nahid Farhady Ghalaty
arXiv:2607. 02469v1 Announce Type: cross Abstract: Software tests and code evolve together: a code change should be followed by new or updated tests that record the new software behavior.
By Jiale Amber Wang, Kaiyuan Wang, Pengyu Nie
arXiv:2608. 02712v1 Announce Type: cross Abstract: Kernel generation for hardware accelerators such as GPUs and NPUs has become a proving ground for large language models (LLMs), and state-of-the-art systems raise correctness through pipelines that couple LLMs with agentic reinforcement learning and evolutionary search.
By Yansong Sun, Shenxiu Wu, Siyuan Chen, Runlin Hou, Junhao Qiu, Junming Cao, Shudi Shao, Zhichao Lu, Qingfu Zhang
arXiv:2604. 01527v4 Announce Type: replace-cross Abstract: Production deployment of AI coding agents requires fast, reproducible evaluation signals.
By Smriti Jha, Matteo Paltenghi, Chandra Maddila, Vijayaraghavan Murali, Shubham Ugare, Satish Chandra
arXiv:2607. 13034v1 Announce Type: new Abstract: Large language model (LLM) agents increasingly automate multi-step engineering and informatics workflows, yet they rarely ask how much effort a task actually requires.
By Junjie Yin, Xinyu Feng