arXiv:2606. 03660v1 Announce Type: new Abstract: Large language models are increasingly used as chemistry assistants, yet most chemistry benchmarks still score only final answers.
By Hongyu Guo, Hao Li, He Cao, Gongbo Zhang, Li Yuan
arXiv:2607. 01061v1 Announce Type: new Abstract: Computer-assisted synthesis planning breaks target molecules into accessible precursors using large libraries of reaction rules that assign each transformation a deterministic, interpretable label.
By Daniel Armstrong, Maarten Dobbelaere, Valentas Olikauskas, Helena Avila, Octavian Susanu, J\'er\^ome Waser, Philippe Schwaller
arXiv:2606. 14814v1 Announce Type: cross Abstract: The Materials Science and Engineering ontology landscape is fragmented along multiple axes simultaneously.
By Thomas Pannek, Wolfgang Grond
arXiv:2507. 21438v2 Announce Type: replace Abstract: Ontologies and knowledge graphs require continuous evolution to remain comprehensive and accurate, but manual curation is labor intensive.
By Vishal Raman, Vijai Aravindh R, Abhijith Ragav
arXiv:2602. 17902v2 Announce Type: replace Abstract: Large language models (LLMs) can plan scientific workflows and generate code, but these capabilities do not specify how scientific state is validated, transferred and recorded across heterogeneous computational and experimental operations.
By Jiaru Bai, Abdulrahman Aldossary, Thomas Swanick, Marcel M\"uller, Yeonghun Kang, Changhyeok Choi, Naruki Yoshikawa, Zijian Zhang, Jin Won Lee, Tsz Wai Ko, Aiwei Yin, Mohammad Ghazi Vakili, Chris Crebolder, Varinia Bernales, Al\'an Aspuru-Guzik
arXiv:2606. 07094v1 Announce Type: cross Abstract: Scientific workflows increasingly generate structured JSON data that is easy to exchange but difficult to interpret consistently across systems due to lacking semantic interoperability.
By Felix Neubauer, Mahdi Jafarkhani, Kenichi Endo, J\"urgen Pleiss, Benjamin Uekermann
The quest for new materials increasingly relies on predictive models and comprehensive simulations that span scales from atomic to macroscopic levels. However, essential data necessary for these model...
arXiv:2607. 07708v1 Announce Type: cross Abstract: Structure-property relationships are foundational to biology, chemistry and materials science, where function, reactivity and physical response emerge from spatial, chemical and periodic organization.
By Chen Tang, Yizhou Wang, Jianyu Wu, Lintao Wang, Shixiang Tang, Pengze Li, Encheng Su, Jun Yao, Jiabei Xiao, Yuqi Shi, Jielan Li, Hongxia Hao, Zhangyang Gao, Fang Wu, Ben Fei, Xiangyu Yue, Pan Tan, Bozitao Zhong, Jinouwen Zhang, Aoran Wang, Yan Lu, Jiaheng Liu, Xinzhu Ma, Liang Hong, Mingyue Zheng, Phil Torr, Bowen Zhou, Wanli Ouyang, Lei Bai
arXiv:2608.22974v1 Announce Type: new
Abstract: Large language model (LLM) agents rely heavily on knowledge encoded in model parameters or presented as unstructured context. In domain-specific tasks,...
By Xiaohui Zhang, Zequn Sun, Chengyuan Yang, Yuanning Cui, Lingbing Guo, Wei Hu
arXiv:2606. 24619v1 Announce Type: new Abstract: Competency Questions (CQs) are the central component of CQ-verification, an established process in which an ontology is evaluated against a set of natural language questions to determine whether the intended purpose of the ontology has been properly modelled.
By Anna Sofia Lippolis, Mohammad Javad Saeedizade, Robin Keskis\"arkk\"a, Aldo Gangemi, Eva Blomqvist, Andrea Giovanni Nuzzolese
arXiv:2609.17291v1 Announce Type: new
Abstract: The quest for new materials increasingly relies on predictive models and comprehensive simulations that span scales from atomic to macroscopic levels....
By Marco Luca Sbodio, Marcos Mart\'inez Galindo, Vanessa Lopez, Blanca Biel, Pablo Canca, Pedro Delgado, Jes\'us I. Mendieta-Moreno, Raphael Tack, Maria J. Caturla
oMeBench is a large-scale, expert-curated benchmark designed to evaluate large language models (LLMs) on organic mechanism reasoning. It contains over 10,000 annotated mechanistic steps, including reaction type labels, intermediate structures, and difficulty ratings, and introduces the oMeS scoring framework to assess logical consistency and chemical structural similarity. Evaluation shows that while current LLMs display promising chemical intuition, they often fail to produce correct and consistent multi-step reasoning, though prompting and fine-tuning can bring smaller models up to the level of closed‑source frontier models.
By Ruiling Xu, Yifan Zhang