arXiv:2608. 04738v1 Announce Type: new Abstract: Autonomous research agents can generate hypotheses, execute experiments, and draft manuscripts, yet their outputs often contain unsupported claims and inconsistencies between research questions, experiments, results, and conclusions.
By Zhenjiang Ren, Ruiji Li, Xujing Zhang, Ziliang Pang, Shuo Ren, Jiajun Zhang
The paper introduces Stochastic Semantic Evidence Graphs (SSEGs), a hierarchical stochastic directed acyclic graph that models uncertainty in AI-agent workflows, from evidence and retrieval to generation and decision mapping. SSEGs expand language nodes into autoregressive token subgraphs, optionally apply semantic reduction and calibration, and preserve uncertain claim–passage relations while propagating Fréchet bounds. The authors derive pathwise error bounds, use nodewise terms to trigger governance checks, and demonstrate through experiments that SSEGs can detect and quantify where uncertainty enters and propagates in AI outputs.
By Matthew Francis Dixon
GraphCert introduces a method to bootstrap graph reasoning agents by generating graph‑grounded question‑answer pairs and certifying the supporting evidence. The approach uses a Bootstrapped Graph Quizzer to produce QA pairs, then executes and semantically curates the evidence into certified rubrics that guide reward‑based training of a Graph Solver. Experiments on five GRBENCH domains show GraphCert outperforms larger LLM agents and demonstrates robust policy transfer across heterogeneous graphs.
By Weiqi Jiang, Yuchen Ying, Rui Wang, Kaixuan Chen, Bingde Hu, Shunyu Liu, Yu Wang, Tongya Zheng
Scientific knowledge graphs organize entities and relations extracted from scientific literature, but they remain inherently incomplete. Missing typed links in such graphs can therefore represent plau...
PathAnchor is a new scientific reasoning system that uses path-structured evidence workspaces instead of independent passages or concepts. It retrieves source-linked Material‑Sensor‑Signal‑System trajectories that preserve role, direction, and supporting evidence, and a controller uses read‑only tools to search, trace, and open exact evidence before producing a claim‑cited answer. In evaluations on 120 flexible‑sensor questions, PathAnchor achieved an 82.6% score, outperformed six other systems, and improved source recall, citation completeness, and reduced tool calls compared to unordered concept graphs.
By Qiuhui Chen, Jiafan Lu, Shuaimin Tang, Tao Dai, Suyuan Wang, Chenrui Ji, Zhenglei Zhou, Weimin Zhong
HyGRAIL is a framework for discovering scientific hypotheses in incomplete knowledge graphs by combining a graph neural network (GNN) triage with large language model (LLM) review. The GNN scores candidate hypotheses and routes only ambiguous cases to the LLM, which receives structured evidence from the graph converted into natural language. Experiments on MatKG show HyGRAIL achieves the highest F1 score, improves over baselines, and cuts LLM calls by over 54%.
By Yihang Sun, Zhihan Zhu, Zhiyuan Jiang, Jingyi Ge, Zixuan Li, Jiaxuan You
arXiv:2607. 17917v1 Announce Type: new Abstract: Scientific Reasoning Graph Extraction (SRGE) aims to recover explicit links among observations, evidence, intermediate claims, and paper-level conclusions.
By Bohan Su, Pengze Li, Yuchen Lu, Xi Chen
TruthInsightBench is a new benchmark designed to evaluate automated scientific discovery agents by presenting them with 40 blind tasks drawn from peer‑reviewed studies across ten domains. Each task provides only a neutral objective and frozen data, withholding source conclusions, expected values, and analysis paths, forcing agents to determine which claim the data support. A fixed LLM‑based judge scores agents on evidentiary maturity across six dimensions, using 29 artifact‑grounded items, enabling fully automated, repeatable evaluation without human grading.
By Zhibo Yang, Chen Zhang, Yuewei Zhang, Hao Wang
arXiv:2602. 02905v2 Announce Type: replace Abstract: Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge.
By Zhen Wang, Fan Bai, Zhongyan Luo, Jinyan Su, Kaiser Sun, Xinle Yu, Jieyuan Liu, Kun Zhou, Claire Cardie, Mark Dredze, Zhiting Hu, Eric P. Xing
arXiv:2608.29588v1 Announce Type: new
Abstract: Reasoning over text-attributed graphs (TAGs) requires large language models (LLMs) to combine a node's text with evidence distributed across its neighb...
By Yilun Liu, Boyu Luo, Yanran Tang, Ruihong Qiu, Zi Huang
MOSAIC is a training‑free framework that adapts Graph Retrieval‑Augmented Generation (GraphRAG) to each query by converting query‑specific evidence needs into a bounded policy over seed selection, traversal, stopping, and evidence selection. It keeps the corpus graph, indexes, scoring, grounding, and answer generation shared, while an LLM analyzer tailors the exploration strategy per query. On GraphRAG‑Bench, MOSAIC improves answer correctness by over 5 points on Medical and 4 points on Novel, achieves high evidence recall and context relevancy, and reduces path and evidence evaluations compared to fixed policies.
By EunKyeong Lee, Kyeong-Jin Oh, Jinwon Kim, Hye Woo Lee, Minsang Song, Hyeongjun Jang, Junyoung Youn
arXiv:2607. 17291v1 Announce Type: new Abstract: Deep research agents increasingly operate over the open web, where relevant records coexist with redundant summaries, outdated reports, and misleading documents.
By Jun Nie, Zhiqin Yang, Zhenheng Tang, Yonggang Zhang, Xiaowen Chu, Xinmei Tian, Bo Han