arXiv:2606. 04494v1 Announce Type: new Abstract: Biomedical agents promise to automate complex biological workflows, yet current systems face two fundamental bottlenecks: bioinformatics tools are highly heterogeneous in interfaces and execution environments, while agent planning still relies on flat prompt-retrieved tool descriptions.
arXiv:2605. 06177v2 Announce Type: replace Abstract: Reproducing and comparing deep research agents today is hard: the same backbone evaluated on the same benchmark can report different accuracies across papers because the harness and tool registry differ, and integrating a new model into a comparable evaluation surface costs weeks of model-specific engineering.
arXiv:2608. 06961v1 Announce Type: new Abstract: Early-stage molecular design is an iterative process, not just a task of generating molecules.
arXiv:2606. 12674v1 Announce Type: new Abstract: Compact language models (LMs) reduce cost, latency, and deployment risk for tool agents.
arXiv:2607. 16038v1 Announce Type: new Abstract: Scientific work increasingly spans heterogeneous artifacts -- papers, code, datasets, scientific file formats, model outputs, figures, manuscripts, and team decisions -- yet general-purpose AI assistants rarely preserve these objects as a coherent, auditable research state.
arXiv:2608. 03468v1 Announce Type: new Abstract: Historical tool-use trajectories provide valuable experience for large language model (LLM) agents to plan and coordinate tool usage.
arXiv:2608. 10039v1 Announce Type: new Abstract: Agentic workflows have become an important abstraction for building reliable LLM-based automation systems by organizing large language models (LLMs), tools, and control logic into explicit execution structures.
arXiv:2607. 14642v1 Announce Type: new Abstract: As Model Context Protocol (MCP) servers emerge as the core infrastructure for connecting LLMs with external tools, existing benchmarks leverage real-world MCP servers to evaluate LLM agents' tool-using capabilities.
arXiv:2606. 31179v1 Announce Type: new Abstract: As AI agents become increasingly capable of complex, long-horizon reasoning, rigorous and holistic evaluation is essential for measuring progress toward real-world healthcare applications.
arXiv:2606. 31229v1 Announce Type: new Abstract: Ideation plays a pivotal role in scientific discovery.
arXiv:2606. 06545v1 Announce Type: cross Abstract: Enterprise agent systems increasingly need to connect large language models to private tools, internal knowledge, and Model Context Protocol (MCP) interfaces.
Historical tool-use trajectories provide valuable experience for large language model (LLM) agents to plan and coordinate tool usage. Existing approaches directly construct tool-level graphs from these trajectories, but the resulting graphs remain tied to specific tools and are hard to generalize across tool sets.
arXiv:2512. 11682v2 Announce Type: replace Abstract: Therapeutic decision-making in clinical medicine constitutes a high-stakes domain in which AI guidance interacts with complex interactions among patient characteristics, disease processes, and pharmacological agents.