arXiv:2510. 25013v2 Announce Type: replace-cross Abstract: Mechanistic interpretability aims to reverse-engineer large language models (LLMs) into human-understandable computational circuits.
By Rabin Adhikari
arXiv:2607. 01553v1 Announce Type: cross Abstract: Transformers have become general-purpose architectures, but their all-to-all self-attention is poorly matched to graph data, whose interactions are sparse, structured and multi-scale.
By Leyan Li, Rennong Yang, Zhenxing Zhang, Liping Hu
arXiv:2610. 09838v1 Announce Type: new Abstract: We present a framework for building and interpreting minimal transformer models.
By Raneem Mahajne, Toviah Moldwin
Positional encodings (PEs) are essential for Transformers. Yet designing effective PEs for non-Euclidean graphs remains challenging.
The paper shows that a plain Transformer can serve as an effective graph learner by adding three lightweight modifications: simplified L₂ attention, adaptive RMS normalization, and an MLP-based positional encoding stem. These changes preserve token magnitude and enable the model to achieve high expressivity on graph benchmarks, outperforming more complex graph transformer variants. The results suggest that plain Transformers can act as a unified backbone for multimodal learning across language, vision, and graph domains.
By Liheng Ma, Soumyasundar Pal, Yingxue Zhang, Philip H. S. Torr, Mark Coates
arXiv:2606. 25293v1 Announce Type: new Abstract: Positional encodings (PEs) are essential for Transformers.
By Yipeng Zhang, Zhongtian Sun, Pietro Li\`o, Kelin Xia
arXiv:2607. 17570v1 Announce Type: new Abstract: Graph foundation models (GFMs) with global attention are increasingly used to represent mixed-integer linear programs (MILPs), aiming to capture structure beyond the locality of standard graph neural networks.
By Md Abrar Jahin, Craig A. Knoblock, Jay Pujara
The paper investigates Graph Transformers (GTs) that use Graph Neural Network (GNN)-based positional encodings. By analyzing GTs through manifold limit models, the authors establish a theoretical link between GTs and Manifold Neural Networks (MNNs), showing that GTs inherit transferability guarantees from their positional encodings. Experiments on standard graph benchmarks confirm that GTs scale comparably to GNNs, and a real‑world shortest‑path estimation task demonstrates their practical efficiency on large terrains.
By Javier Porras-Valenzuela, Zhiyang Wang, Teresa Shang, Yusu Wang, Alejandro Ribeiro
arXiv:2602.15239v3 Announce Type: replace
Abstract: Transformers have achieved remarkable success across domains, motivating the rise of Graph Transformers (GTs) as attention-based architectures for...
By Javier Porras-Valenzuela, Zhiyang Wang, Teresa Shang, Yusu Wang, Alejandro Ribeiro
The paper investigates how the choice of graph tokenization affects transformer expressivity. It analyzes three tokenization families—spectral, random‑walk, and adjacency—showing that each induces different depth requirements and that some tokenizations are inherently lossy or ill‑conditioned for certain tasks. The authors prove lower bounds and impossibility results for converting between tokenizations and validate these findings with experiments on synthetic and real‑world data.
By Maya Bechler-Speicher, Gilad Yehudai, Gil Harari, Clayton Sanford, Amir Globerson, Joan Bruna
arXiv:2605.12491v2 Announce Type: replace
Abstract: Vision Transformers (ViTs) learn rich visual-semantic representations through all-to-all self-attention among patch tokens. However, this design im...
By Alan Z. Song, Yinjie Chen, Mu Nan, Deva Ramanan, Michael J. Tarr, Andrew F. Luo
arXiv:2609.07961v1 Announce Type: new
Abstract: Graph modeling, a crucial task for representing complex relationships in graph-structured data, has achieved significant success in recent years. Howev...
By Thanh-Dat Truong, Sarah Alharbi, Susan Gauch, Xinghui Zhao, Marios Savvides, Khoa Luu