arXiv Machine Learning

Beyond Soft Masks: Hard-Perturbation Mixup Explainer for Robust GNN Explainability

arXiv:2606. 05756v1 Announce Type: new Abstract: Graph Neural Networks (GNNs) have demonstrated remarkable performance across a range of applications involving graph-structured data, particularly in high-stakes domains.

arXiv Machine Learning
Sep 7

A Comparative Study of Counterfactual Explainers for Graph Neural Networks Enabling Multiple Types of Graph Edit

The paper presents a comparative analysis of six state‑of‑the‑art counterfactual explainers for graph neural networks, focusing on methods that can both add and remove edges to alter model predictions. It evaluates these explainers across diverse real‑world and synthetic datasets, covering binary and multi‑class graph and node classification tasks, using a range of quantitative and qualitative metrics. The study highlights the trade‑offs between explanation size, coverage, and quality, aiming to pinpoint each method’s strengths and weaknesses to inform future research.

By Maria Myrto Villia, Filippos Gouidis, Theodore Patkos, Panos Trahanias
arXiv Machine Learning
Aug 31

Can Subgraph Explanations Be Weaponized to Steal Graph Neural Networks?

Graph Machine Learning as a Service platforms now offer explainability interfaces to satisfy regulatory transparency, but this transparency can be exploited. The paper introduces a novel model extraction attack for graph classification that operates under strict black‑box constraints, using only discrete class labels and binary explanation masks. The method guides Monte Carlo edge sensitivity estimation toward decision boundaries with Hoeffding guarantees and narrows the search space using explanation subgraphs, outperforming comparable baselines on benchmark datasets.

By Ojas Nimase, Jiate Li, Yue Zhao, Yushun Dong
arXiv Machine Learning
1d ago

WOMBAT: Whitebox Oracle for Molecular Benchmarking and Attribution Testing

WOMBAT is a benchmark comprising 14 whitebox graph neural networks (GNNs) whose message‑passing weights are manually set to detect specific SMARTS motifs. Each model’s decision rule is explicitly known, providing a ground truth for attribution that allows researchers to identify and study errors in post‑hoc explainers such as GNNExplainer, PGExplainer, and Integrated Gradients. The authors validate the models on millions of PubChem molecules, demonstrate how Integrated Gradients can be misled to spread attribution, and release the dataset, models, and evaluation code for future XAI tool development.

By Dominik Matuszek, Bartosz Zieli\'nski, Tomasz Danel, Dawid Rymarczyk
arXiv Machine Learning
Aug 31

Self-Explainable Multi-Label Graph Neural Network for Correlated Evidence Attribution

The paper introduces SEMGNN, an end‑to‑end self‑explainable multi‑label graph neural network that simultaneously classifies nodes and identifies edges contributing to each predicted label. Unlike post‑hoc explainers, SEMGNN jointly learns a predictor and a sparse edge‑mask explainer, leveraging label‑label correlations to improve classification and generate distinct, coherent explanations for each label. Experiments on synthetic and real‑world networks in social, entertainment, and life‑science domains demonstrate competitive predictive performance and more faithful, compact label‑conditioned explanations.

By Yingqi Feng, Yufei Tang, Min Shi, Xingquan Zhu