arXiv:2606. 03495v1 Announce Type: new Abstract: Heterogeneous graph neural networks (HGNNs) have demonstrated remarkable performance in modeling complex relational data, however their interpretability in high-stakes applications remains a critical challenge.
By Zongrui Li, Yuhang Zhao, Ying Zhao, Yuanzhao Guo, Qiang Huang, Yuan Tian
arXiv:2607. 04600v1 Announce Type: new Abstract: Graph eXplainable AI (G-XAI) is increasingly important for making Graph Neural Networks interpretable and accountable.
By Francesco Paolo Nerini, Mirko Zaffaroni, Paolo Baracco, Gabriele Ciravegna, Alan Perotti
The paper presents a comparative analysis of six state‑of‑the‑art counterfactual explainers for graph neural networks, focusing on methods that can both add and remove edges to alter model predictions. It evaluates these explainers across diverse real‑world and synthetic datasets, covering binary and multi‑class graph and node classification tasks, using a range of quantitative and qualitative metrics. The study highlights the trade‑offs between explanation size, coverage, and quality, aiming to pinpoint each method’s strengths and weaknesses to inform future research.
By Maria Myrto Villia, Filippos Gouidis, Theodore Patkos, Panos Trahanias
arXiv:2607. 21381v1 Announce Type: new Abstract: Instance-level explanations aim to reveal the rationale behind a model's decisions for a specific graph.
By Jiancu Chen, Shuyin Xia, Guan Wang, Degang Chen, Fan Chen
Instance-level explanations aim to reveal the rationale behind a model's decisions for a specific graph. Previous methods explain graph neural networks (GNNs) by selecting important edges to induce subgraphs, where edge importance is assessed by perturbing each edge and observing changes in the model predictions.
Graph eXplainable AI (G-XAI) is increasingly important for making Graph Neural Networks interpretable and accountable. While a growing number of explainers are available, choosing the right method and assessing the trustworthiness of its outputs remains unclear.
Graph Machine Learning as a Service platforms now offer explainability interfaces to satisfy regulatory transparency, but this transparency can be exploited. The paper introduces a novel model extraction attack for graph classification that operates under strict black‑box constraints, using only discrete class labels and binary explanation masks. The method guides Monte Carlo edge sensitivity estimation toward decision boundaries with Hoeffding guarantees and narrows the search space using explanation subgraphs, outperforming comparable baselines on benchmark datasets.
By Ojas Nimase, Jiate Li, Yue Zhao, Yushun Dong
arXiv:2608. 16038v1 Announce Type: cross Abstract: Post-hoc Graph Neural Network (GNN) explainers commonly follow a Perturb-Query paradigm, inferring the importance of graph elements based on queried predictions to perturbed inputs.
By Ziluowen Luo, Jun Yin, Ruochen Liu, Ming Cheng, Shirui Pan, Chengqi Zhang, Senzhang Wang
arXiv:2605. 07527v2 Announce Type: replace-cross Abstract: Recent work has observed that explanations produced by Self-Interpretable Graph Neural Networks (SI-GNNs) can be self-inconsistent: when the model is reapplied to its own explanatory graph subset, it may produce a different explanation.
By Wenxin Tai, Yaqian Liu, Ting Zhong, Fan Zhou
arXiv:2601. 17469v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have shown remarkable capabilities in learning from graph-structured data with various applications such as social analysis and bioinformatics.
By Wei Ju, Wei Zhang, Siyu Yi, Zhengyang Mao, Yifan Wang, Jingyang Yuan, Zhiping Xiao, Ziyue Qiao, Ming Zhang
WOMBAT is a benchmark comprising 14 whitebox graph neural networks (GNNs) whose message‑passing weights are manually set to detect specific SMARTS motifs. Each model’s decision rule is explicitly known, providing a ground truth for attribution that allows researchers to identify and study errors in post‑hoc explainers such as GNNExplainer, PGExplainer, and Integrated Gradients. The authors validate the models on millions of PubChem molecules, demonstrate how Integrated Gradients can be misled to spread attribution, and release the dataset, models, and evaluation code for future XAI tool development.
By Dominik Matuszek, Bartosz Zieli\'nski, Tomasz Danel, Dawid Rymarczyk
The paper introduces SEMGNN, an end‑to‑end self‑explainable multi‑label graph neural network that simultaneously classifies nodes and identifies edges contributing to each predicted label. Unlike post‑hoc explainers, SEMGNN jointly learns a predictor and a sparse edge‑mask explainer, leveraging label‑label correlations to improve classification and generate distinct, coherent explanations for each label. Experiments on synthetic and real‑world networks in social, entertainment, and life‑science domains demonstrate competitive predictive performance and more faithful, compact label‑conditioned explanations.
By Yingqi Feng, Yufei Tang, Min Shi, Xingquan Zhu