arXiv AI

BioStudyBench: Evaluating Agents on Post-Cutoff Biomedical Studies

BioStudyBench is a new benchmark that tests AI agents on 25 long‑horizon analysis tasks derived from biomedical studies published between July and September 2026, after the models’ knowledge cutoffs. Each task gives the agent a neutral research question but no data files, requiring it to locate and download relevant public data, search literature using tools limited to pre‑cutoff records, and perform data analysis to report findings. The benchmark shows that providing data and tools improves model performance by an average of 47 percentage points, with closed‑weight models outperforming open‑weight ones (best open‑weight 81.3% vs. best closed‑weight 94.7%).

arXiv AI
Jun 24

BioMedArena: An Open-source Toolkit for Building and Evaluating Biomedical Deep Research Agents

arXiv:2605. 06177v2 Announce Type: replace Abstract: Reproducing and comparing deep research agents today is hard: the same backbone evaluated on the same benchmark can report different accuracies across papers because the harness and tool registry differ, and integrating a new model into a comparable evaluation surface costs weeks of model-specific engineering.

By Jinge Wu, Hongjian Zhou, Mingde Zeng, Jiayuan Zhu, Junde Wu, Jiazhen Pan, Ayush Noori, Sean Wu, Honghan Wu, Fenglin Liu, David A. Clifton
arXiv AI
Jun 11

Can AI Agents Synthesize Scientific Conclusions?

arXiv:2606. 11337v1 Announce Type: new Abstract: Scientific AI agents increasingly retrieve evidence, reason across sources, and synthesize conclusions used in consequential decisions.

By Hayoung Jung, Pedro Viana Diniz, Jos\'e Reinaldo Corr\^ea Roveda, Abner Fernandes da Silva, Haeun Jung, Enoch Tsai, Aleksandra Korolova, Manoel Horta Ribeiro
arXiv AI
6d ago

AI-Driven Reproducibility and Analytical Robustness in Scientific Discovery

The paper introduces SEER‑Repro, a benchmark of 20 SEER‑based studies with data and resources for reproduction. An LLM agent reproduces 77.4% of 2,190 atomic claims and provides executable baselines. An agentic analysis pipeline then tests robustness by identifying analytical choices, proposing alternatives, and rerunning analyses, flagging potentially consequential choices in 9.5% of fully reproduced findings for expert review.

By Shicheng Liu, Krista Opsahl-Ong, Andrew Drozdov, Julian Killingback, Arnav Singhvi, Ronak Pradeep, Michael Bendersky, James C. Dickerson, Monica S. Lam
arXiv AI
Jul 14

FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights

arXiv:2602. 02905v2 Announce Type: replace Abstract: Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge.

By Zhen Wang, Fan Bai, Zhongyan Luo, Jinyan Su, Kaiser Sun, Xinle Yu, Jieyuan Liu, Kun Zhou, Claire Cardie, Mark Dredze, Zhiting Hu, Eric P. Xing
arXiv AI
Aug 7

CT Open: An Open-Access, Uncontaminated, Live Platform for the Open Challenge of Clinical Trial Outcome Prediction

arXiv:2604. 16742v2 Announce Type: replace Abstract: Scientists have long sought to accurately predict outcomes of real-world events before they happen.

By Jianyou Wang, Youze Zheng, Longtian Bao, Hanyuan Zhang, Qirui Zheng, Yuhan Chen, Yang Zhang, Matthew Feng, Maxim Khan, Aditya K. Sehgal, Christopher D. Rosin, Ramamohan Paturi, Umber Dube, Leon Bergen
arXiv AI
Sep 7

TruthInsightBench: An Evidence-Grounded Benchmark for Automated Evaluation of Open-Ended Scientific Discovery Agents

TruthInsightBench is a new benchmark designed to evaluate automated scientific discovery agents by presenting them with 40 blind tasks drawn from peer‑reviewed studies across ten domains. Each task provides only a neutral objective and frozen data, withholding source conclusions, expected values, and analysis paths, forcing agents to determine which claim the data support. A fixed LLM‑based judge scores agents on evidentiary maturity across six dimensions, using 29 artifact‑grounded items, enabling fully automated, repeatable evaluation without human grading.

By Zhibo Yang, Chen Zhang, Yuewei Zhang, Hao Wang
arXiv Computation and Language
Sep 11

DeepResearch Bench II: Diagnosing Deep Research Agents via Rubrics from Expert Reports

Deep Research Bench II is a new benchmark designed to evaluate Deep Research Agents (DRAs) by requiring them to produce research reports for 132 grounded tasks across 22 domains. Each report is assessed using 9,430 fine‑grained binary rubrics that cover information recall, analysis, and presentation, all derived from expert‑written investigative articles through a rigorous LLM‑plus‑human pipeline. Evaluation of current state‑of‑the‑art DRAs shows that even the best models satisfy fewer than 50% of these rubrics, highlighting a significant gap between automated agents and human experts.

By Ruizhe Li, Mingxuan Du, Benfeng Xu, Chiwei Zhu, Xiaorui Wang, Zhendong Mao
arXiv AI
Oct 16

ReviewPilot: A Multi-Agent System for Screening and Data Extraction in Systematic Reviews

ReviewPilot is a conversational multi‑agent system designed to automate the PRISMA workflow for systematic literature reviews, covering both paper screening and evidence extraction. Researchers can customize screening criteria and extraction schemas through dialogue, with a project memory preserving configurations and revisions. The system records the rationale for each screening decision and the source of every extracted value, and it has demonstrated superior performance to single‑prompt LLMs and AgentSLR in epidemiology, achieving screening macro F1 scores up to 0.776 and extraction F1 up to 0.788, while also showing close agreement with human annotators in biomedicine and human‑computer interaction case studies.

By Zhaoqian Xue, Shaoze Zhou, Xuexin Li, Junting Mu, Haozheng Liu, Zhongyin Wang, Yichun He, Renkai Ma, Hao Zhou, Sarah Bratt, Siyuan Ma, Chen Chen, Lingyao Li
Hugging Face Trending Papers
Jun 29

DEEPMED Search: An Open-Source Agentic Platform for Medical Deep Research with Introspective Verification

Navigating the deluge of heterogeneous medical data, from academic literature (PubMed) to clinical guidelines (Web) and private knowledge bases, remains a critical bottleneck for evidence-based medicine. While commercial black-box tools lack transparency, standard open-source RAG implementations frequently suffer from reasoning drift when handling complex, long-tail queries.