Navigating the deluge of heterogeneous medical data, from academic literature (PubMed) to clinical guidelines (Web) and private knowledge bases, remains a critical bottleneck for evidence-based medicine. While commercial black-box tools lack transparency, standard open-source RAG implementations frequently suffer from reasoning drift when handling complex, long-tail queries.
arXiv:2606. 29746v1 Announce Type: new Abstract: Navigating the deluge of heterogeneous medical data, from academic literature (PubMed) to clinical guidelines (Web) and private knowledge bases, remains a critical bottleneck for evidence-based medicine.
arXiv:2606. 08093v1 Announce Type: new Abstract: Pathology is the cornerstone of modern medicine, where accurate decision-making relies heavily on evidence-based practices.
PathPocket is a multimodal AI co‑pilot that grounds pathology decision‑making in evidence. It builds the largest pathology evidence corpus (≈110,472 documents) and a hypergraph of 4.55 million entities and 7.10 million relations to support traceable reasoning. The system handles text and multimodal queries, including ROI and gigapixel whole‑slide images, and outperforms current state‑of‑the‑art models on a benchmark of over 200,000 real‑world cases, improving pathologists’ diagnostic accuracy and confidence.
ClinAgent is a conversational system that uses a ReAct-based LLM agent to retrieve and synthesize clinical trial information from multiple sources such as ClinicalTrials.gov, PubMed, and a local dataset. The agent iteratively reasons over user queries, selects appropriate tools, and refines its actions to provide grounded, up-to-date responses in natural language across multi-turn interactions. Evaluation across three phases shows that DeepSeek (thinking mode) excels in planning quality while Gemini 3.0 Flash delivers the highest overall performance and expert ratings, demonstrating the promise of agentic AI for improving clinical trial data access.
arXiv:2608. 11420v1 Announce Type: new Abstract: Medical diagnostic reasoning is a high-impact use case for LLMs that carries significant implications for the health and wellbeing of users.
arXiv:2607. 24850v2 Announce Type: replace-cross Abstract: Recent advances in large language models (LLMs) have enabled search agents to autonomously tackle complex tasks across extended search and reasoning horizons.
The paper introduces Biomedica, an open-source dataset sourced from PubMed Central that includes over 6 million scientific articles and 24 million image‑text pairs, along with 27 metadata fields and expert human annotations. To facilitate use, the authors provide scalable streaming and search APIs via a web server. They demonstrate the dataset’s value by training embedding models, chat‑style models, and retrieval‑augmented chat agents, all of which outperform previous open systems in their categories.
DataSTORM is an LLM‑based agentic system designed to conduct deep research over large‑scale structured databases and internet sources. It applies principles of Exploratory Data Analysis and Data Storytelling to frame research as a thesis‑driven analytical process, iteratively generating hypotheses, performing quantitative reasoning, and crafting coherent narratives. Evaluations on InsightBench and a new ACLED‑based dataset show that DataSTORM surpasses existing systems, achieving significant improvements in insight‑level recall and summary‑level scores.
arXiv:2606. 05241v1 Announce Type: cross Abstract: Public benchmarks enable fair and reproducible evaluation of LLM reasoning, but they become fragile for deep research agents that actively search the web during inference.
arXiv:2607. 15280v1 Announce Type: new Abstract: Sequential diagnosis requires balancing diagnostic accuracy against resource costs through iterative information gathering.
arXiv:2609.27297v2 Announce Type: replace Abstract: Agentic science envisions many autonomous agents investigating concurrently while building on a shared, evolving body of scientific knowledge. This...
arXiv:2605. 06177v2 Announce Type: replace Abstract: Reproducing and comparing deep research agents today is hard: the same backbone evaluated on the same benchmark can report different accuracies across papers because the harness and tool registry differ, and integrating a new model into a comparable evaluation surface costs weeks of model-specific engineering.