OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data
arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.
arXiv:2603. 06952v2 Announce Type: replace Abstract: As graphs scale to billions of nodes and edges, graph Machine Learning workloads are constrained by the cost of multi-hop traversals over exponentially growing neighborhoods.
arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.
Scaffold is a new unsupervised graph sparsification framework for graph neural networks that uses support graph theory preconditioners to jointly control dilation and congestion, thereby preserving short communication paths while avoiding bottlenecks. It achieves superior aggregate ranking across 19 homophilic and heterophilic benchmarks, recovering or closely approaching full‑graph GNN performance with only 10%–50% of the original edges. The method reduces memory usage to less than half and cuts end‑to‑end training time, including sparsification overhead.
arXiv:2608. 02128v1 Announce Type: new Abstract: Training Graph Neural Networks on large graphs is challenged by the memory cost of storing all node representations across layers.
arXiv:2602. 01553v3 Announce Type: replace-cross Abstract: Link prediction is a core challenge in graph machine learning, demanding models that capture rich and complex topological dependencies.
arXiv:2609.39673v1 Announce Type: new Abstract: Can a pretrained graph model replace training and tuning a separate predictor for each dataset? Answering this requires evaluating prediction quality a...
arXiv:2609.37057v1 Announce Type: new Abstract: Achieving strong performance with graph neural networks (GNNs) typically requires training and hyperparameter tuning for each dataset, incurring repeat...
arXiv:2607. 17272v1 Announce Type: new Abstract: Node representation learning has advanced rapidly, yet most existing methods rely on per-dataset training and hyperparameter tuning.
arXiv:2609.06154v1 Announce Type: new Abstract: One-shot federated graph learning generally aims to train Graph Neural Networks (GNNs) across clients with disconnected subgraphs in a single communica...
DeltaGNN introduces an information flow control mechanism that uses a new connectivity measure, the information flow score, to mitigate over‑smoothing and over‑squashing in Graph Neural Networks. This approach enables linear computational and memory overhead while effectively capturing both short‑range and long‑range node interactions. Experiments on ten diverse real‑world datasets demonstrate superior performance with limited computational complexity.
The paper introduces an asynchronous message‑passing framework for Graph Neural Networks to mitigate oversquashing, a problem where distant nodes cannot effectively communicate due to structural bottlenecks. Unlike conventional synchronous updates, the method updates a centrality‑guided batch of nodes at each layer, allowing information to propagate sequentially and reducing the need for increased channel capacity. Experiments on six standard and two long‑range graph classification benchmarks show notable performance gains, including 5 % improvement on REDDIT‑BINARY and 4 % on Peptides‑struct.
arXiv:2607. 26404v1 Announce Type: new Abstract: Graph Neural Networks (GNN) facilitate effective prediction on graph data such as molecules, media networks and neural network blueprints.
arXiv:2602. 09258v2 Announce Type: replace Abstract: Deployed graph neural networks (GNNs) are frozen at deployment yet must fit clean data, generalize under distribution shifts, and remain stable to perturbations.