arXiv Machine Learning

Message Passing Does More with Less for In-Context Learning on Graphs

arXiv AI

Jun 11

GILT: An LLM-Free, Tuning-Free Graph Foundational Model for In-Context Learning

arXiv:2510. 04567v3 Announce Type: replace-cross Abstract: Graph Neural Networks (GNNs) are powerful tools for processing relational data but often struggle to generalize to unseen graphs, giving rise to the development of Graph Foundational Models (GFMs).

By Weishuo Ma, Yanbo Wang, Xiyuan Wang, Lei Zou, Muhan Zhang

llms

arXiv Machine Learning

Sep 10

LoGIC: Budgeted Context Construction for Node-Level Graph In-Context Learning with Tabular Foundation Models

arXiv:2609.05955v1 Announce Type: new Abstract: Tabular foundation models have become powerful graph learners. Systems such as G2T-FM and GraphPFN encode each node as a feature row and make predictio...

By Mingqi Yang, Zidong Guo, Jihui Yang, Wenming Zuo

llms

arXiv Machine Learning

1d ago

NodeGround: A Node Classification Benchmark in the Graph Foundation Model Era

arXiv:2609.39673v1 Announce Type: new Abstract: Can a pretrained graph model replace training and tuning a separate predictor for each dataset? Answering this requires evaluating prediction quality a...

By Jinmo Lee, Dooho Lee, Minho Jeong, Jaemin Yoo

benchmarks

arXiv Machine Learning

Jul 21

Node4All: Learning Node Representation Beyond Datasets

arXiv:2607. 17272v1 Announce Type: new Abstract: Node representation learning has advanced rapidly, yet most existing methods rely on per-dataset training and hyperparameter tuning.

By Dooho Lee, Jaemin Yoo

llms benchmarks

arXiv Machine Learning

Aug 21

GraphPFN: A Prior-Data Fitted Graph Foundation Model

arXiv:2509. 21489v4 Announce Type: replace Abstract: Graph foundation models face several fundamental challenges including transferability across diverse domains and data scarcity, which calls into question the very feasibility of creating such models.

By Dmitry Eremeev, Oleg Platonov, Gleb Bazhenov, Artem Babenko, Liudmila Prokhorenkova

llms fine-tuning benchmarks

arXiv Machine Learning

Jun 2

OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data

arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.

By Louisa Cornelis, Johan Mathe, Louis Van Langendonck, Guillermo Bern\'ardez, Nina Miolane

benchmarks

arXiv AI

Aug 28

Rethinking Message Passing as Retrieval for Text-Attributed Graph Learning

The paper reinterprets graph neural networks (GNNs) as retrieval-augmented models, where each layer uses an MLP on a node representation and a permutation‑invariant summary of retrieved graph context instead of traditional message passing. It introduces RTA, a lightweight MLP‑based framework that replaces structural message passing with label‑aware retrieval and propagation, and provides theoretical links to softmax‑attention message passing and robustness to mis‑retrieved outliers. Experiments on text‑attributed graph benchmarks demonstrate that RTA matches or surpasses strong GNN and graph LLM baselines while improving efficiency and robustness.

By Jintang Li, Yuhong Chen, Ruofan Wu, Binli Luo, Jiayi Ji, Hui Li, Rongrong Ji

llms rag benchmarks

arXiv Machine Learning

Aug 11

CGRL: Causal-Guided Representation Learning for Node-Level Out-of-Distribution Generalization

arXiv:2603. 24304v2 Announce Type: replace-cross Abstract: Graph Neural Networks (GNNs) deliver strong performance on graph tasks, but their accuracy drops significantly under out-of-distribution (OOD) scenarios.

By Bowen Lu, Liangqiang Yang, Teng Li, Kun Zhang

diffusion benchmarks

arXiv Machine Learning

Jun 30

GLIP: Graph and LLM Joint Pretraining for Graph-Level Tasks

arXiv:2606. 29773v1 Announce Type: new Abstract: Graphs are widely used to model relational systems, with applications in domains such as social networks, finance, and biomedicine.

By Haoxin Sun, Yiqing Lin, Yajun Huang, Chenhui Dong, Mingjun Li, Zhongzhi Zhang

llms diffusion fine-tuning benchmarks safety

arXiv Machine Learning

Jul 14

Surprisingly Simple and Effective Multi-Domain Graph Foundation Model through Graph-to-Table Alignment

arXiv:2607. 11374v1 Announce Type: new Abstract: Graph Foundation Models (GFMs) have emerged as a promising paradigm for learning transferable representations across diverse graph domains.

By Chunyu Hu, Tianyin Liao, Ge Lan, Xingxuan Zhang, Jianxin Li, Peng Cui, Ziwei Zhang

llms diffusion benchmarks safety

arXiv Machine Learning

Jun 25

CauScale: Neural Causal Discovery at Scale

arXiv:2602. 08629v2 Announce Type: replace Abstract: Causal discovery is essential for advancing data-driven fields such as scientific AI and data analysis, yet existing approaches face significant time- and space-efficiency bottlenecks when scaling to large graphs.

By Bo Peng, Sirui Chen, Jiaguo Tian, Yu Qiao, Chaochao Lu

rag

arXiv Machine Learning

3d ago

The Universal Classifier for Graph Learning

arXiv:2609.36302v1 Announce Type: new Abstract: While foundation models have revolutionized natural language processing and computer vision by leveraging universal vocabularies, Graph Machine Learnin...

By Ben Finkelshtein, Andr\'{e} Linhares, Petar Veli\v{c}kovi\'{c}, Bryan Perozzi, Mikhail Galkin

diffusion computer-vision nlp

Related stories