arXiv Computation and Language

Is a 9B Decision Foundation Model Needed for Symptom-to-Disease Classification? Fine-Tuning Clef-Flash Against TF-IDF Baselines

The paper evaluates whether a 9‑billion parameter decision foundation model, Clef‑Flash, is necessary for symptom‑to‑disease classification. Fine‑tuning the model on the 24‑class Symptom2Disease benchmark yields 95.42% accuracy, but simple TF‑IDF linear classifiers achieve higher accuracy (98.75%) with far faster inference. Ablation studies show that predictions can hinge on single descriptive clauses, indicating that the benchmark may not fully capture the model’s capabilities.

arXiv AI
Aug 24

Inhibitory Attention for Clinical Long-Context Reasoning: Characterizing and Mitigating Lost-in-the-Middle Effects in EHR Processing

The paper identifies a new problem in clinical natural language processing called the clinical lost‑in‑the‑middle (CLitM) effect, where large language models perform poorly on information located near the center of long electronic health record (EHR) documents. Using the MedAlign dataset, the authors quantify a 21.9‑percentage‑point accuracy gap across 2,196 instruction‑response pairs and six models, showing that most critical facts lie in the CLitM trough. They propose Query‑Conditioned Clinical Suppression (QCCS), a lightweight context‑selection gate that outperforms traditional retrieval methods (BM25, dense retrieval, cross‑encoder reranking) on a held‑out set of 83 instructions, achieving up to 25.3% accuracy for middle‑position queries. whyItMatters":"The study demonstrates that standard retrieval strategies fail to reliably surface central clinical information, and that a query‑aligned selection mechanism can substantially improve model performance on critical EHR data."

By Sanjay Basu
arXiv Machine Learning
Sep 25

Language Specificity vs. Domain Diversity: Benchmarking Transformers for Bangla Medical NER

This study benchmarks transformer models for Bangla medical named entity recognition (NER), comparing BanglaBERT, multilingual BERT (mBERT), XLM‑RoBERTa, and GPT‑4o mini under zero‑shot and few‑shot prompting. Across a full test set of 3,179 samples, fine‑tuned XLM‑RoBERTa achieves a new state‑of‑the‑art F1‑score of 0.5959, while BanglaBERT lags with 0.4937, suggesting that domain diversity outweighs language specificity. The analysis shows high performance on Medicine and Specialist entities (F1 > 0.83) but lower accuracy on Symptoms (F1 0.4367), and demonstrates that fine‑tuned transformers outperform prompt‑only approaches by a factor of 3.76.

By Rakib Abdullah, Md. Maruful Islam Maruf
arXiv AI
Oct 5

From Retrieval to Typed Decisions: Calibrated System One Models from Biomedical Sentence Encoders

The paper introduces SBERT2S1, a method that transforms Sentence-Transformers encoders into typed decision models for biomedical text, and presents BIODECIDE, a suite for evaluating such models, along with MEDLINE‑S1, a large training set of 243k decisions derived from NLM indexing. Experiments show that retrieval‑trained encoders improve zero‑shot matching of content‑bearing options, and that a prior‑fused residual (PFR) head benefits most from retrieval pre‑training, while a cross‑head (C) head generally outperforms PFR across all objectives. The authors also release code, data, and a model, and discuss calibration and reward‑normalisation effects in their RLCD recipe.

By Pritam Deka
arXiv AI
Oct 5

Where Do Apparent LLM Clinical Triage Failures Arise? Localizing the Multiple-Choice Format Effect

The study investigates why large language models (LLMs) show different triage performance when answering clinician‑authored vignettes in multiple‑choice versus free‑text formats. Using sparse‑autoencoder features on Gemma 3 and Qwen3 models, the authors find that medical information is encoded similarly in both formats, but at the decision token the multiple‑choice scaffold dominates, with over 91% of attribution coming from scaffold‑peaking features. The effect varies by model, and shuffling option order eliminates simple positional bias, suggesting the format influence is tied to answer selection rather than earlier case processing.

By David Fraile Navarro, Berardino Como, Jialei Sheng, Soundariya Ananthan, Shlomo Berkovsky