arXiv:2608. 03855v1 Announce Type: new Abstract: Transformer models have revolutionized natural language processing (NLP), and text-based molecular representations like SMILES have successfully extended these architectures to chemistry.
By David Ming Segura, Jeremy Goumaz, Joshua W. Sin, Bojana Rankovi\'c, Philippe Schwaller
arXiv:2602. 02320v4 Announce Type: replace-cross Abstract: Molecular function is largely determined by structure.
By Feiyang Cai, Guijuan He, Yi Hu, Jingjing Wang, Joshua Luo, Tianyu Zhu, Srikanth Pilla, Gang Li, Ling Liu, Feng Luo
arXiv:2606. 05693v1 Announce Type: new Abstract: Large language models (LLMs) have shown promise for molecular property prediction, but their ability to reason over chemical structures remains limited, as molecular representations such as SMILES differ substantially from the natural language on which LLMs are primarily trained.
By Joey Chan, Wonbin Kweon, Ashley Shin, Niharika Bhattacharjee, Pengcheng Jiang, Yue Guo, Jiawei Han
arXiv:2606. 03057v1 Announce Type: cross Abstract: Large language models (LLMs) are increasingly used for molecular tasks, but it remains unclear which molecular representation to use.
By Arun Raja, Garrett M. Morris, Kian Ming A. Chai
arXiv:2606. 03660v1 Announce Type: new Abstract: Large language models are increasingly used as chemistry assistants, yet most chemistry benchmarks still score only final answers.
By Hongyu Guo, Hao Li, He Cao, Gongbo Zhang, Li Yuan
arXiv:2608. 11283v1 Announce Type: cross Abstract: Computation-ready metal-organic framework (MOF) databases are essential for high-throughput screening, yet many reported crystal structures remain chemically unreasonable or disordered, compromising simulation fidelity.
By Guobin Zhao, Xiao-Yan Li
arXiv:2607. 29479v1 Announce Type: new Abstract: Text-to-molecule generation is typically formulated as a one-shot sequence generation problem, where a model directly maps target descriptions to molecular representations.
By Qian Tan, Xuanyu Zhu, Lei Jiang, Zhonghang Yuan, Chen Zhang, Yuqiang Li
arXiv:2607. 06452v1 Announce Type: cross Abstract: Biomedical question answering requires not only accurate extraction of information from scientific literature but also reliable integration of evidence across multiple documents.
By Taeyun Roh, Eunha Lee, Wonjune Jang, Sohyun Chung, Junha Jung, Jaewoo Kang
arXiv:2607. 28618v1 Announce Type: cross Abstract: Chemistry literature synthesis often requires assembling specific findings scattered across many publications, yet existing literature-search systems primarily return ranked document lists.
By Bing Yan, Gregory Wolfe, Stefano Martiniani, Kyunghyun Cho
arXiv:2608. 12395v1 Announce Type: new Abstract: We describe Research Assistant, an internal LLM-based system developed at AstraZeneca to help scientists and clinicians explore biomedical questions across a broad range of data sources.
By Piotr Grabowski, Mohamed Alameen, Jorge Bretones, Sabina Cardell, Miguel Carmona, Gavin Edwards, Ben Grainger, Sameh Hassan, Erik Jansson, Artur Kuziakhmetov, Albert Maristany, Hebatallah Mohamed, Andriy Nikolov, Sebastian Nilsson, Mark O'Donoghue, James Pacileo, Ashiq Sultan, Alex Voegele, Michael Ughetto
arXiv:2607. 12771v1 Announce Type: new Abstract: Reaction mechanisms consist of the step-by-step sequences of elementary reactions that explain chemical transformations.
By Xingyu Dang, Haocheng Tang, Junmei Wang, Yanjun Li
arXiv:2509. 21028v4 Announce Type: replace Abstract: We introduce SciTrek, a synthetic question-answering dataset for assessing and improving long-context numerical reasoning in large language models (LLMs).
By Miao Li, Alexander Gurung, Irina Saparina, Mirella Lapata