arXiv AI

Chemically Meaningful Textualization Enables Explainable Validation of Metal-Organic Frameworks by Large Language Models

arXiv:2608. 11283v1 Announce Type: cross Abstract: Computation-ready metal-organic framework (MOF) databases are essential for high-throughput screening, yet many reported crystal structures remain chemically unreasonable or disordered, compromising simulation fidelity.

arXiv Machine Learning
Jun 9

Enhancing Spatial Reasoning in Large Language Models for Metal-Organic Frameworks Structure Prediction

arXiv:2601. 09285v2 Announce Type: replace Abstract: Metal-organic frameworks (MOFs) are porous crystalline materials with broad applications such as carbon capture and drug delivery, yet accurately predicting their 3D structures remains a significant challenge.

By Mianzhi Pan, JianFei Li, Peishuo Liu, Botian Wang, Yawen Ouyang, Yiming Rong, Hao Zhou, Jianbing Zhang
arXiv Machine Learning
Jun 5

MolE-RAG: Molecular Structure-Enhanced Retrieval-Augmented Generation for Chemistry

arXiv:2606. 05693v1 Announce Type: new Abstract: Large language models (LLMs) have shown promise for molecular property prediction, but their ability to reason over chemical structures remains limited, as molecular representations such as SMILES differ substantially from the natural language on which LLMs are primarily trained.

By Joey Chan, Wonbin Kweon, Ashley Shin, Niharika Bhattacharjee, Pengcheng Jiang, Yue Guo, Jiawei Han
arXiv AI
Aug 24

An LLM agent for end-to-end computational materials discovery

MAESTRO is a large language model agent that automates the full screening pipeline for metal‑organic frameworks (MOFs). It parses extensive MOF literature, links publications to crystal structures, curates a computation‑ready database, and then applies a progressively more expensive computational strategy to identify promising candidates. The identified materials for wet flue gas separation come from unrelated studies, demonstrating the agent’s ability to uncover high‑performance materials across domains.

By Chen Yuntong, Huang Ju, Liu Yu, Zhao Dan, Sun Mingqi, Ju Chentian, Liu Yanbing, Huang Lijiang, Zhao Guobin
arXiv AI
Sep 23

ChemVTS-Bench: Evaluating Visual-Textual-Symbolic Reasoning of Multimodal Large Language Models in Chemistry

ChemVTS-Bench is a domain-authentic benchmark that evaluates Visual‑Textual‑Symbolic reasoning in multimodal large language models for chemistry. It presents diverse chemical problems—organic molecules, inorganic materials, and 3D crystal structures—in three input modes: visual-only, visual‑text hybrid, and SMILES-based symbolic. The benchmark includes an automated agent workflow for inference, answer verification, and failure diagnosis, and shows that visual-only inputs and structural chemistry remain challenging for current models.

By Zhiyuan Huang, Baichuan Yang, Zikun He, Yanhong Wu, Fang Hongyu, Zhenhe Liu, Lin Dongsheng, Bing Su
arXiv Machine Learning
Sep 22

MolSC: Leveraging Substituent Contributions to Enhance Fine-grained Molecular Understanding in LLMs

MolSC is a new dataset of 181,000 substituent-level examples that captures how attaching specific substituents to molecular scaffolds changes properties such as bioactivity and physicochemical descriptors. The authors also provide MolSC-Bench, a held‑out benchmark of 1,541 examples that are disjoint from MolSC at scaffold, substituent, and molecule levels. Experiments show that training molecular large language models on MolSC markedly improves their ability to predict substituent contributions, outperforming existing models on a range of downstream chemistry tasks.

By Hyuntae Park, Sooyeon Kim, Jiwon Park, SangKeun Lee
Hugging Face Trending Papers
Jul 12

Large language model agents accelerate inverse design of metal-organic frameworks for gas separation

Metal-organic frameworks (MOFs) offer a highly modular platform for adsorptive gas separation, yet their vast reticular design space makes inverse design difficult under simultaneous constraints of chemical validity, separation performance, and structural diversity. Here, we present LEMO Agent, a large-language-model agent framework for closed-loop inverse design of gas-separation MOFs in MOFid space.