arXiv AI

SCIRIGOR:Evaluating Open-Ended Scientific Analysis Beyond Final Scores

arXiv AI
Jun 30

SciVisAgentBench: A Benchmark for Evaluating Scientific Data Analysis and Visualization Agents

arXiv:2603. 29139v2 Announce Type: replace Abstract: Recent advances in large language models (LLMs) have enabled agentic systems to translate natural-language intent into executable scientific visualization (SciVis) tasks.

By Kuangshi Ai, Haichao Miao, Kaiyuan Tang, Nathaniel Gorski, Jianxin Sun, Guoxi Liu, Helgi I. Ingolfsson, David Lenz, Hanqi Guo, Hongfeng Yu, Teja Leburu, Michael Molash, Bei Wang, Tom Peterka, Chaoli Wang, Shusen Liu
arXiv AI
4d ago

TruthInsightBench: An Evidence-Grounded Benchmark for Automated Evaluation of Open-Ended Scientific Discovery Agents

TruthInsightBench is a new benchmark designed to evaluate automated scientific discovery agents by presenting them with 40 blind tasks drawn from peer‑reviewed studies across ten domains. Each task provides only a neutral objective and frozen data, withholding source conclusions, expected values, and analysis paths, forcing agents to determine which claim the data support. A fixed LLM‑based judge scores agents on evidentiary maturity across six dimensions, using 29 artifact‑grounded items, enabling fully automated, repeatable evaluation without human grading.

By Zhibo Yang, Chen Zhang, Yuewei Zhang, Hao Wang
arXiv AI
Jun 11

Can AI Agents Synthesize Scientific Conclusions?

arXiv:2606. 11337v1 Announce Type: new Abstract: Scientific AI agents increasingly retrieve evidence, reason across sources, and synthesize conclusions used in consequential decisions.

By Hayoung Jung, Pedro Viana Diniz, Jos\'e Reinaldo Corr\^ea Roveda, Abner Fernandes da Silva, Haeun Jung, Enoch Tsai, Aleksandra Korolova, Manoel Horta Ribeiro
arXiv Computation and Language
Aug 24

Tree-of-Concerns: Hierarchical Multi-Agent Debate for Unstated-Limitation Extraction in Scientific Critique

Tree-of-Concerns is a multi‑agent framework that uses specialized skeptic personas to conduct parallel debate trees, each focusing on a specific category of potential limitations in scientific papers. The system employs structured, evidence‑grounded argumentation and a panel review mechanism to correct drift and miscalibration, ultimately extracting unstated limitations. Experiments on the ToC‑Bench benchmark show that the approach improves precision by 79% and coverage by 11% over leading baselines, providing reviewers with specific, evidence‑based concerns for systematic evaluation.

By Sahil Mishra, Niranjan Rajeev, Tanmoy Chakraborty
arXiv AI
Aug 28

Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research

The paper "Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research" argues that large language model agents must faithfully implement reference methods, design experiments that truly test claims, and provide supporting evidence. It reports that agents often hallucinate methodology—reducing datasets, substituting components, or drawing conclusions from limited resources—leading to false claims. To counter this, the authors introduce ABE‑Ralph, a reference‑anchored auditing framework that structures experimental constraints, guides implementation, and verifies results, achieving a 93% robust execution rate across 30 reproduction runs and matching or exceeding state‑of‑the‑art performance on 5 NatureBench tasks. "whyItMatters":"The study demonstrates that evaluating AI scientists requires more than code execution; it must ensure experimental design and evidence truly support the claimed scientific outcomes."

By Lezhi Yu, Xiaogang Xu, Yuhua Zhou, Shuibing He, Aimin Pan
arXiv AI
Sep 3

Can Coding Agents Reproduce Findings in Computational Materials Science?

The paper introduces AutoMat, a benchmark designed to test large language model (LLM) coding agents on their ability to reproduce claims from computational materials science. AutoMat presents three challenges: reconstructing underspecified procedures, navigating specialized toolchains, and assessing whether the evidence supports a claim. Experiments show that current LLM agents achieve low success rates, with the best setting reaching only 53%, and failures stem mainly from incomplete procedures, methodological deviations, and execution fragility.

By Ziyang Huang, Yi Cao, Ali K. Shargh, Jing Luo, Ruidong Mei, Mohd Zaki, Zhan Liu, Wyatt Bunstine, William Jurayj, Somdatta Goswami, Tyrel McQueen, Michael Shields, Jaafar El-Awady, Paulette Clancy, Benjamin Van Durme, Nicholas Andrews, William Walden, Daniel Khashabi
arXiv AI
Jul 8

Prompt-to-Paper: Agentic AI System for Bioinformatics

arXiv:2607. 05456v1 Announce Type: new Abstract: While recent advances in large language models have enabled end-to-end automated manuscript generation, existing systems suffer from three critical deficiencies: (i) generated claims are not deterministically grounded in verifiable literature, (ii) experimental results are frequently fabricated rather than executed, and (iii) there exists no standardized, multi-dimensional framework to assess whether AI-generated manuscripts meet the quality and rigor required for real-world publication.

By Ramsha Kamran, Maheera Amjad, Zartasha Mustansar, Arsalan Shaukat, Salma Sherbaz, Muhammad U. S. Khan