arXiv AI

Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research

The paper "Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research" argues that large language model agents must faithfully implement reference methods, design experiments that truly test claims, and provide supporting evidence. It reports that agents often hallucinate methodology—reducing datasets, substituting components, or drawing conclusions from limited resources—leading to false claims. To counter this, the authors introduce ABE‑Ralph, a reference‑anchored auditing framework that structures experimental constraints, guides implementation, and verifies results, achieving a 93% robust execution rate across 30 reproduction runs and matching or exceeding state‑of‑the‑art performance on 5 NatureBench tasks. "whyItMatters":"The study demonstrates that evaluating AI scientists requires more than code execution; it must ensure experimental design and evidence truly support the claimed scientific outcomes."

arXiv AI
Oct 5

Who Guards the Benchmarks? Automated Auditing of LLM Agent Benchmarks

The paper introduces BenchGuard, a framework that uses advanced language models to audit execution-based agent benchmarks. BenchGuard systematically cross-verifies benchmark artifacts through structured LLM protocols, optionally incorporating agent solutions or execution traces for deeper diagnostics. In tests on ScienceAgentBench and BIXBench Verified-50, BenchGuard uncovered numerous author-confirmed and expert-identified issues, including fatal errors that made tasks unsolvable, and demonstrated cost-effective auditing for complex bioinformatics tasks.

By Xinming Tu (Minta), Tianze Wang (Minta), Yingzhou (Minta), Lu, Kexin Huang, Yuanhao Qu, Sara Mostafavi
arXiv AI
Jul 14

FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights

arXiv:2602. 02905v2 Announce Type: replace Abstract: Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge.

By Zhen Wang, Fan Bai, Zhongyan Luo, Jinyan Su, Kaiser Sun, Xinle Yu, Jieyuan Liu, Kun Zhou, Claire Cardie, Mark Dredze, Zhiting Hu, Eric P. Xing
arXiv AI
Aug 11

From Trajectories to Evidence: Auditable Experimental Records for Industrial Research Agents

arXiv:2608. 05235v1 Announce Type: cross Abstract: Research agents increasingly conduct multi-round machine-learning experiments in industrial recommendation settings and retain the resulting trajectories to guide later decisions.

By Zijie Zhuang, Changxin Lao, Pengbo Xu, Hanwen Xu, Ruochen Yang, Yingzhi He, Peng Zhang, Jiangxia Cao, Yusheng Huang, Guohong Mu, Jian Liang, Ruiming Tang, Shuang Yang, Zhaojie Liu, Wenwu Ou, Kun Gai
arXiv AI
Jun 18

Externalizing Research Synthesis and Validation in AI Scientists through a Research Harness

arXiv:2606. 18874v1 Announce Type: new Abstract: AI systems can increasingly automate scientific workflows, but the reasoning that links prior evidence, generated ideas, experiments and final claims often remains implicit inside model inference.

By Zijian Wang, Hanqi Li, Ziyue Yang, Zijian Hu, Shenghan Zuo, Yunzhe Zhang, Da Ma, Danyu Luo, Chenrun Wang, Jing Peng, Tiancheng Huang, Sijia Guo, Huayang Wang, Zichen Zhu, Senyu Han, Yilu Cao, Kai Yu, Lu Chen
arXiv AI
Jun 11

Can AI Agents Synthesize Scientific Conclusions?

arXiv:2606. 11337v1 Announce Type: new Abstract: Scientific AI agents increasingly retrieve evidence, reason across sources, and synthesize conclusions used in consequential decisions.

By Hayoung Jung, Pedro Viana Diniz, Jos\'e Reinaldo Corr\^ea Roveda, Abner Fernandes da Silva, Haeun Jung, Enoch Tsai, Aleksandra Korolova, Manoel Horta Ribeiro
arXiv AI
Sep 3

Can Coding Agents Reproduce Findings in Computational Materials Science?

The paper introduces AutoMat, a benchmark designed to test large language model (LLM) coding agents on their ability to reproduce claims from computational materials science. AutoMat presents three challenges: reconstructing underspecified procedures, navigating specialized toolchains, and assessing whether the evidence supports a claim. Experiments show that current LLM agents achieve low success rates, with the best setting reaching only 53%, and failures stem mainly from incomplete procedures, methodological deviations, and execution fragility.

By Ziyang Huang, Yi Cao, Ali K. Shargh, Jing Luo, Ruidong Mei, Mohd Zaki, Zhan Liu, Wyatt Bunstine, William Jurayj, Somdatta Goswami, Tyrel McQueen, Michael Shields, Jaafar El-Awady, Paulette Clancy, Benjamin Van Durme, Nicholas Andrews, William Walden, Daniel Khashabi
arXiv AI
Sep 7

TruthInsightBench: An Evidence-Grounded Benchmark for Automated Evaluation of Open-Ended Scientific Discovery Agents

TruthInsightBench is a new benchmark designed to evaluate automated scientific discovery agents by presenting them with 40 blind tasks drawn from peer‑reviewed studies across ten domains. Each task provides only a neutral objective and frozen data, withholding source conclusions, expected values, and analysis paths, forcing agents to determine which claim the data support. A fixed LLM‑based judge scores agents on evidentiary maturity across six dimensions, using 29 artifact‑grounded items, enabling fully automated, repeatable evaluation without human grading.

By Zhibo Yang, Chen Zhang, Yuewei Zhang, Hao Wang