arXiv AI

ProteoKnight: Convolution-based Phage Virion Protein Classification and Uncertainty Analysis

arXiv:2508. 07345v2 Announce Type: replace-cross Abstract: \textbf{Introduction:} Accurate prediction of Phage Virion Proteins (PVP) is essential for genomic studies due to their crucial role as structural elements in bacteriophages.

arXiv AI

Jun 17

SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypes

arXiv:2507. 04704v3 Announce Type: replace-cross Abstract: Understanding how cellular morphology, gene expression, and spatial context jointly shape tissue function is a central challenge in biology.

By Zhenglun Kong, Mufan Qiu, John Boesen, Xiang Lin, Sukwon Yun, Tianlong Chen, Manolis Kellis, Marinka Zitnik

diffusion multimodal benchmarks safety

arXiv Machine Learning

Aug 12

Retrieval-Augmented Vision Foundation Models for Robust Leukemia Cell Classification across Multiple Microscopy Datasets

arXiv:2608. 10657v1 Announce Type: cross Abstract: Leukemia cell image classification is challenged by real-world domain shifts from acquisition, staining, illumination, and site protocols, causing single-dataset models to generalize poorly in real clinical scenarios.

By Carlos Zamora, Hiram Zuniga, Ulises Orozco-Rosas, Kenia Picos

rag computer-vision fine-tuning

arXiv AI

Jun 9

AMN: An Adaptive Multi-Scale Fusion Network with Boundary and Uncertainty Modeling for Nuclei Segmentation

arXiv:2606. 07633v1 Announce Type: cross Abstract: Accurate classification of nuclei subtypes in histopathology images is critical for downstream tasks including tumor grading, immune infiltrate quantification, and prognosis prediction.

By Spoorthi M, Suja Palaniswamy

llms computer-vision benchmarks

arXiv AI

Jul 21

GenSyn10: A Multi-Generative AI Dataset For Benchmarking Image Classification

arXiv:2607. 16283v1 Announce Type: cross Abstract: The rapid advancement of generative AI has outpaced our ability to reliably detect its outputs, particularly when detectors encounter generators they have not seen before.

By Md Faraz Kabir Khan, Saeed Anwar, Ghulam Mubashar Hassan

llms diffusion computer-vision fine-tuning multimodal benchmarks

arXiv Machine Learning

Jul 27

CARDIAG: A Dense Segment Classification Benchmark of Deep Learning Architectures for Coronary Angiography

arXiv:2607. 22139v1 Announce Type: cross Abstract: Accurate pixel-level classification of coronary angiograms is critical for cardiovascular disease assessment, yet the field lacks standardized evaluation protocols.

By Dominik Bernard Lau, Hubert Malinowski, Jerzy Szyjut, Adam Brzeski, Tomasz Dziubich, Rados{\l}aw Targo\'nski, Tomasz Figatowski, Natalia Zieli\'nska

computer-vision benchmarks

arXiv Machine Learning

Jun 26

Training-Free Generation of Protein Sequences from Small Family Alignments via Stochastic Attention

arXiv:2603. 14717v2 Announce Type: replace Abstract: Generating novel protein sequences that respect a family's statistical constraints typically requires training deep generative models on thousands to millions of examples.

By Jeffrey D. Varner

llms safety

arXiv AI

Jul 2

MalariAI: A Label-Resilient Decoupled Framework for Universal Cell Segmentation and Explainable Stage Classification in Dense Malaria Blood Smears

arXiv:2607. 00385v1 Announce Type: cross Abstract: Automated malaria diagnosis from blood smear microscopy is a critical challenge in global health AI; in resource-limited settings, the scarcity of expert microscopists remains the primary bottleneck to timely and accurate diagnosis.

By Kaysarul Anas Apurba, Md Hasibul Hasan, Mohammed Ali, Tanzilur Rahman

computer-vision

arXiv Machine Learning

Jun 18

Protein-Based Fish Species Identification: Dataset, Models, and Insights from Native Bangladeshi Fish

arXiv:2606. 18302v1 Announce Type: cross Abstract: Correct identification of fish species is highly significant for food security, economic development, and climate resilience in Bangladesh.

By Md Nasiat Hasan Fahim, Md. Abid Ullah Muhib, Mohammad Shahidur Rahman

llms benchmarks

arXiv AI

1d ago

SpIn-ViT: Designing a Sparsity-Induced Vision Transformer That Is Mechanistically Interpretable

arXiv:2608. 14922v1 Announce Type: cross Abstract: Mechanistic interpretability has recently expanded to Vision Transformers (ViTs), with Sparse Autoencoders (SAEs) increasingly used as post-hoc tools to decompose internal representations into sparse and more interpretable features.

By Philip H. Lee, Parth Padalkar

llms computer-vision efficiency benchmarks safety

arXiv AI

Aug 12

JEPA-DNA: Grounding Genomic Foundation Models through Joint-Embedding Predictive Architectures

arXiv:2602. 17162v3 Announce Type: replace Abstract: Genomic Foundation Models (GFMs) typically rely on Masked Language Modeling (MLM) or Next-Token Prediction (NTP) to learn the "Laws of Nature".

By Ariel Larey, Elay Dahan, Amit Bleiweiss, Raizy Kellerman, Guy Leib, Omri Nayshool, Dan Ofer, Tal Zinger, Dan Dominissini, Gideon Rechavi, Nicole Bussola, Simon Lee, Shane O'Connell, Dung Hoang, Marissa Wirth, Alexander W. Charney, Nati Daniel, Yoli Shavit

rag diffusion benchmarks safety

arXiv AI

6d ago

COLORA: Efficient Fine-Tuning for Convolutional Models with a Study Case on Optical Coherence Tomography Image Classification

arXiv:2505. 18315v3 Announce Type: replace-cross Abstract: We introduce \textbf{CoLoRA} (Convolutional Low-Rank Adaptation), a parameter-efficient fine-tuning method for convolutional neural networks (CNNs).

By Mariano Rivera, Angello Hoyos

computer-vision fine-tuning

arXiv AI

Jun 8

DaX: Learning General Pathology Representations Across Scales

arXiv:2606. 06983v1 Announce Type: cross Abstract: Computational pathology requires visual representations that transfer across diverse clinical endpoints and remain robust to variation in magnification, staining, scanner type, slide preparation, and input resolution.

By Bokai Zhao, Yiyang Zhang, Long Bai, Tai Ma, Hanqing Chao, Minfeng Xu

benchmarks

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