arXiv:2508. 07345v2 Announce Type: replace-cross Abstract: \textbf{Introduction:} Accurate prediction of Phage Virion Proteins (PVP) is essential for genomic studies due to their crucial role as structural elements in bacteriophages.
arXiv:2608.07632v2 Announce Type: replace-cross Abstract: Image-based profiling captures rich phenotypic signatures for drug discovery and functional genomics. Large public datasets like JUMP Cell Pa...
arXiv:2509.23552v2 Announce Type: replace-cross Abstract: Antimicrobial Resistance (AMR) is a rapidly escalating global health crisis. While genomic sequencing enables rapid prediction of resistance...
The study benchmarks Vision Transformers (ViTs) against convolutional neural networks (CNNs) for fine‑grained orchid genus identification in New Guinea’s species‑rich, data‑poor flora. Using a two‑stage system that first predicts genus and then retrieves similar species images, the authors fine‑tuned four pretrained backbones on 16,701 photographs from 120 genera and 1,350 species. The self‑supervised ViT DINOv2 achieved the highest genus accuracy (macro top‑1 66.9 %) and outperformed both CNNs and a domain‑matched pretrained ViT, demonstrating strong species retrieval and open‑set detection capabilities.
arXiv:2507. 04704v3 Announce Type: replace-cross Abstract: Understanding how cellular morphology, gene expression, and spatial context jointly shape tissue function is a central challenge in biology.
MT-ProtBERT is a multi‑task extension of ProtBERT designed for classifying intrinsically disordered proteins (IDPs) in low‑data settings. It combines Dynamic Window Masking, a Multi‑Scale 1D Convolutional classifier, and auxiliary biochemistry‑informed objectives to jointly optimize masked language modeling and domain‑specific tasks. In experiments on phosphorylation site prediction and protein compaction prediction, MT‑ProtBERT outperforms the RNN‑based IDP model PARROT across all limited‑data tasks.
Recent advances in pathology foundation models have enabled accurate prediction of spatial transcriptomics (ST) from routine H&E images. However, existing explainability methods for vision transformer...
arXiv:2608. 10657v1 Announce Type: cross Abstract: Leukemia cell image classification is challenged by real-world domain shifts from acquisition, staining, illumination, and site protocols, causing single-dataset models to generalize poorly in real clinical scenarios.
arXiv:2606. 07633v1 Announce Type: cross Abstract: Accurate classification of nuclei subtypes in histopathology images is critical for downstream tasks including tumor grading, immune infiltrate quantification, and prognosis prediction.
arXiv:2607. 16283v1 Announce Type: cross Abstract: The rapid advancement of generative AI has outpaced our ability to reliably detect its outputs, particularly when detectors encounter generators they have not seen before.
arXiv:2607. 22139v1 Announce Type: cross Abstract: Accurate pixel-level classification of coronary angiograms is critical for cardiovascular disease assessment, yet the field lacks standardized evaluation protocols.
arXiv:2603. 14717v2 Announce Type: replace Abstract: Generating novel protein sequences that respect a family's statistical constraints typically requires training deep generative models on thousands to millions of examples.
arXiv:2609.01027v1 Announce Type: new Abstract: Out-of-distribution (OOD) detection predicts whether a test image belongs to none of the predefined classes. To evaluate this task, benchmarks need ima...