arXiv Machine Learning

VESTIGE: A Knowledge-Guided Masking Strategy for Corruption-Aware Fine-Tuning of Genomic Transformers, Validated on Ancient DNA Reconstruction

arXiv:2607. 27712v1 Announce Type: new Abstract: Standard masked-language-model fine-tuning applies a uniform masking probability across every token position, assuming reconstruction difficulty is position-agnostic.

arXiv Machine Learning
Aug 27

CropCop: An Auditable 120-Class Plant-Health Model from Benchmark Reconstruction to a Quantised Runtime Artifact

CropCop is a closed‑set plant‑health recognition system covering 120 operational classes, built from a rigorously audited dataset of 109,107 images after removing 3,233 duplicate relationships. The model, based on a fine‑tuned DINOv3 ConvNeXt‑Tiny, achieves 98.51% accuracy and 96.87% macro‑F1 on a locked internal test, while a quantised MobileNetV4 variant reaches 98.46% accuracy and 96.23% macro‑F1 in a 22.60 MiB runtime artifact. Validation‑only post‑training quantisation and a compact ExecuTorch/XNNPACK PTE ensure high fidelity between the trained model and its deployed form, with minimal decision changes between the INT8 graph and the final artifact.

By Rana Muhammad Ahmed, Sabahat Abbas
arXiv Computation and Language
Sep 14

SynthSentry: Detecting Synthetic Data Contamination in Language Model Training Data

The paper introduces SynthSentry, a model‑agnostic method for detecting synthetic data contamination in language‑model training corpora. It computes a distributional divergence score based on lexical diversity collapse, n‑gram tail truncation, and perplexity variance across reference models, requiring no access to the generating model or synthetic labels. Experiments on English corpora contaminated by small open‑weight generators and an instruction‑tuned model show that SynthSentry ranks contamination severity accurately, maintains low false‑positive rates after calibration, and does not degrade downstream fine‑tuning performance at the tested scale.

By Praveen Kumar Myakala, Ravichandra Namburi, Sowmya Keragodu Jayaramu, Sooraj George Thomas
arXiv Computer Vision
Aug 25

HiFiC-G: Adapting HiFiC for Hi-C Contact Matrices

The paper investigates adapting the HiFiC generative image compression model, originally designed for natural photographs, to compress Hi‑C chromatin contact maps while preserving biologically relevant features. By replacing HiFiC’s distortion term with a spatially‑weighted MSE that emphasizes loops, TAD boundaries, stripes, and compartments, and adding an insulation‑score loss, the authors fine‑tune a pretrained HiFiC checkpoint in a three‑phase strategy to create HiFiC‑G. Evaluation on two cell lines shows HiFiC‑G better retains local structures such as stripes and TAD boundaries, though long‑range A/B compartment preservation remains limited due to architectural constraints.

By Andre Antonio Straton