arXiv:2609.35877v1 Announce Type: cross
Abstract: Many DNA foundation models are pretrained by masking parts of a sequence and asking the model to reconstruct them. Standard masked pretraining expose...
By Monireh Safari, Pablo Millan Arias, Scott C. Lowe, Lila Kari, Angel X. Chang, Graham W. Taylor
arXiv:2606. 20502v1 Announce Type: cross Abstract: Whether LLMs scoring well on vulnerability benchmarks genuinely reason about security or merely pattern-match on contaminated data remains unresolved.
By Arastoo Zibaeirad, Marco Vieira
arXiv:2607. 19426v2 Announce Type: replace-cross Abstract: Large single-cell datasets are expensive to store, curate, and repeatedly reuse for model training.
By Yaodi Luo, Peize He, Lingbei Meng, Bowen Han, Zheng Lu, Jianqing Zhu, Lian Zhang
arXiv:2607. 19426v1 Announce Type: cross Abstract: Single-cell datasets are increasingly costly to store, audit, and reuse for model training.
By Yaodi Luo, Peize He, Bowen Han, Lingbei Mengg
arXiv:2605.01699v4 Announce Type: replace
Abstract: Recent attacks show that behavioural unlearning of large language models leaves internal traces recoverable by adversarial probes. We characterise...
By Anamika Paul Rupa, Anietie Andy
CropCop is a closed‑set plant‑health recognition system covering 120 operational classes, built from a rigorously audited dataset of 109,107 images after removing 3,233 duplicate relationships. The model, based on a fine‑tuned DINOv3 ConvNeXt‑Tiny, achieves 98.51% accuracy and 96.87% macro‑F1 on a locked internal test, while a quantised MobileNetV4 variant reaches 98.46% accuracy and 96.23% macro‑F1 in a 22.60 MiB runtime artifact. Validation‑only post‑training quantisation and a compact ExecuTorch/XNNPACK PTE ensure high fidelity between the trained model and its deployed form, with minimal decision changes between the INT8 graph and the final artifact.
By Rana Muhammad Ahmed, Sabahat Abbas
arXiv:2607. 14070v1 Announce Type: cross Abstract: Genomic foundation models such as Evo 2 learn rich sequence representations, but their value for biosecurity screening is largely unexplored.
By Jeremy Guntoro, Alexander Dack, Dylan Danno, Michaela Jan\v{c}ovi\v{c}ov\'a, Kri\v{z}an Jurinovi\'c, Vanessa Smilansky
arXiv:2606. 09864v1 Announce Type: cross Abstract: Key-value (KV) cache quantization is widely used to reduce Large Language Model (LLM) inference memory, yet existing evaluations solely focus on measuring perplexity and accuracy without assessing the safety impact.
By Bruce Changlong Xu, Adarsh Kumarappan, Mu Zhou
arXiv:2602. 15253v2 Announce Type: replace Abstract: Neural scaling laws -- power-law relationships between loss, model size, and data -- have been extensively documented for language and vision transformers, yet their existence in single-cell genomics remains largely unexplored.
By Ihor Kendiukhov
The paper introduces SynthSentry, a model‑agnostic method for detecting synthetic data contamination in language‑model training corpora. It computes a distributional divergence score based on lexical diversity collapse, n‑gram tail truncation, and perplexity variance across reference models, requiring no access to the generating model or synthetic labels. Experiments on English corpora contaminated by small open‑weight generators and an instruction‑tuned model show that SynthSentry ranks contamination severity accurately, maintains low false‑positive rates after calibration, and does not degrade downstream fine‑tuning performance at the tested scale.
By Praveen Kumar Myakala, Ravichandra Namburi, Sowmya Keragodu Jayaramu, Sooraj George Thomas
arXiv:2605. 00074v2 Announce Type: replace-cross Abstract: DNA-synthesis providers screen incoming orders by searching the requested sequence against curated hazard lists.
By Najmul Hasan
The paper investigates adapting the HiFiC generative image compression model, originally designed for natural photographs, to compress Hi‑C chromatin contact maps while preserving biologically relevant features. By replacing HiFiC’s distortion term with a spatially‑weighted MSE that emphasizes loops, TAD boundaries, stripes, and compartments, and adding an insulation‑score loss, the authors fine‑tune a pretrained HiFiC checkpoint in a three‑phase strategy to create HiFiC‑G. Evaluation on two cell lines shows HiFiC‑G better retains local structures such as stripes and TAD boundaries, though long‑range A/B compartment preservation remains limited due to architectural constraints.
By Andre Antonio Straton