arXiv AI

Bayesian inference of composition-dependent phase diagrams

arXiv:2309. 01271v2 Announce Type: replace-cross Abstract: Phase diagrams serve as a highly informative tool for materials design, encapsulating information about the phases that a material can manifest under specific conditions.

arXiv Machine Learning
1d ago

Learning ab initio phase-field models

The paper introduces a method to construct phase‑field models directly from ab initio data by projecting molecular dynamics onto species‑density fields using the Mori‑Zwanzig formalism. Neural networks parameterize the resulting non‑local free energy and mobility, trained on short MD trajectories generated with machine‑learning interatomic potentials. Demonstrations on an iron‑boron melt and hydrogen‑helium mixtures show the approach can predict pressure‑dependent stability, immiscibility boundaries, and large‑scale droplet dynamics beyond conventional atomistic simulations.

By Mengyi Chen, Peichen Zhong, Zihan Zhang, Qianxiao Li
arXiv Machine Learning
Sep 10

Atomistic Modeling of Chemical Disorder in Materials: Bridging Conventional Methods and AI-Assisted Approaches

The article reviews strategies for modeling chemical disorder in materials, addressing the gap between experimental descriptions of disorder and the detailed configurations required for atomistic simulations and AI workflows. It evaluates traditional approaches such as mean-field theories, cluster expansion, and Monte Carlo, alongside emerging AI-powered methods like universal interatomic potentials and generative models. The review also discusses how AI can accelerate computational schemes and enable disorder-native capabilities, providing a roadmap for integrating disorder into realistic AI-accelerated materials discovery.

By Jiayu Peng, Peichen Zhong
arXiv AI
Jun 2

Coupling Language Models with Physics-based Simulation for Synthesis of Inorganic Materials

arXiv:2606. 00315v1 Announce Type: new Abstract: Modern generative machine learning (ML) models can propose novel inorganic crystalline materials with targeted properties; however, synthesis planning of these materials remains difficult due to the complexity of the associated physical processes and limited availability of computational tools.

By Edward W. Staley, Tom Arbaugh, Michael Pekala, Alexander New, Christopher D. Stiles, Nam Q. Le, Gregory Bassen, Wyatt Bunstine, Tyrel McQueen
arXiv Machine Learning
Sep 4

FrOGS: Discrete Neural Sampler for Independent Alloy Configurations Across Chemical Conditions

FrOGS is a hybrid discrete neural sampler that couples an autoregressive model with a continuous-time Markov chain, trained under a single shared loss to sample alloy configurations across many chemical conditions. It produces independent, unbiased configurations, estimates the partition function, and yields consistent thermodynamic observables on a common absolute free‑energy scale. The method matches exact results for the 2D Ising model and reproduces reference phase diagrams for AgPd and CuAu, avoiding mode collapse and correctly recovering the stability range of the CuAu$_3$ phase.

By Kyucheol Min, Elyssa Hofgard, Tess Smidt
arXiv Machine Learning
Jul 7

AquaGen: Scaling generative models to molecular dynamics precision on thousands of atoms

arXiv:2607. 03513v1 Announce Type: cross Abstract: We present AquaGen, the first all-atom, explicit solvent, periodic-boundary-condition-aware generative model that produces molecular configurations from the Boltzmann distribution at a fraction of the cost of molecular dynamics (MD).

By Emmanuel Bengio, Sanjeev Raja, Yui Tik Pang, Kerstin Klaeser, Cristian Gabellini, Nikhil Shenoy, Francesco Di Giovanni, Prudencio Tossou
arXiv Statistics ML
6d ago

Multivariate conformal uncertainty propagation in multitask atomistic simulation: Successes and pitfalls

The paper explores multivariate conformal uncertainty propagation for multitask atomistic simulations, introducing methods such as Bonferroni‑corrected hyperrectangles, hyperellipsoidal sets based on Mahalanobis distance, and custom loss functions within conformal risk control. It applies these techniques to calibrate predictions of energies, forces, and stresses, then propagates the resulting uncertainty sets to downstream quantities like elastic constants and vacancy formation energies. The study emphasizes how incorporating correlation predictions can capture symmetries and error cancellation, and discusses the interaction between computational protocols and conformal guarantees.

By Katharine Fisher, Michael Herbst, James Kermode, Youssef Marzouk
arXiv Machine Learning
Sep 10

Condition aware learning enables robust prediction of oligonucleotide melting behavior across diverse chemistries and assay conditions

arXiv:2609.05454v1 Announce Type: cross Abstract: Oligonucleotide melting temperature is a fundamental determinant of nucleic acid hybridization and underpins the design of molecular diagnostics, pol...

By Danielle L. Ferreira, Lifeng Lin, Adam Aslam, Nicholas Chang, Rebekah G. Baig, Edgar Baculi, Zoey Cao, Melanie Senn
arXiv Machine Learning
Sep 22

SPIBER: Reconstructing Free Energy Landscapes from Short, Unconverged Trajectories with Generative Flow Networks

arXiv:2609.22663v1 Announce Type: cross Abstract: Molecular systems have many degrees of freedom, but their metastable behavior can often be described by a few collective variables. Identifying these...

By Venkata Sai Sreyas Adury (Chemical Physics Program and Institute for Physical Science and Technology, University of Maryland), Pratyush Tiwary (Biophysics Program and Institute for Physical Science and Technology, University of Maryland, Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, University of Maryland Institute for Health Computing, Bethesda, USA)