arXiv Machine Learning

Learning ab initio phase-field models

The paper introduces a method to construct phase‑field models directly from ab initio data by projecting molecular dynamics onto species‑density fields using the Mori‑Zwanzig formalism. Neural networks parameterize the resulting non‑local free energy and mobility, trained on short MD trajectories generated with machine‑learning interatomic potentials. Demonstrations on an iron‑boron melt and hydrogen‑helium mixtures show the approach can predict pressure‑dependent stability, immiscibility boundaries, and large‑scale droplet dynamics beyond conventional atomistic simulations.

arXiv AI
Aug 26

Learning the Kohn-Sham map with neural operators for quasi-linear scaling density functional theory

The paper presents a neural operator that learns the Kohn–Sham map, directly predicting electron density from the Kohn–Sham potential without orbital diagonalization. Using a domain‑invariant SE(3)‑equivariant Fourier neural operator trained on 8,504 molecules and solids, the model achieves quasi‑linear scaling self‑consistent field (SCF) convergence across diverse systems—including organic molecules, insulators, and metals—while reproducing Kohn–Sham DFT accuracy for densities, spectra, and structural observables. This enables large‑scale simulations, such as magnesium dislocation densities with 82,500 valence electrons, on a single GPU.

By Danish Khan, Maurice D. Hanisch, Nikolai Argatoff, Evan Xie, Sandeep Sharma, Anima Anandkumar
arXiv Machine Learning
2d ago

A strategic roadmap for an atomistic machine-learning ecosystem

arXiv:2609.39090v1 Announce Type: cross Abstract: Data-driven machine learning (ML) techniques have become an essential tool in many domains of science. Their application to atomistic simulations of...

By J\"org Behler, Michele Ceriotti, Cecilia Clementi, G\'abor Cs\'anyi, Alin-Marin Elena, Aditi Krishnapriyan, Joseph W. Abbott, Fabio Affinito, Albert P. Bart\'ok, Ilyes Batatia, Filippo Bigi, Florian N. Br\"unig, Yannick Calvino Alonso, Giuseppe Carleo, Aur\'elie Champagne, Stefan Chmiela, Marc L. Descoteaux, Ralf Drautz, Alexandra Farcas, Meng Gao, Rohit Goswami, Michael F. Herbst, Christian Holm, James R. Kermode, Alexander L. M. Knoll, Tobias Kreiman, Hoang-Thien Luu, Yury Lysogorskiy, Mihai-Cosmin Marinica, Rocco Meli, Klaus-Robert M\"uller, Frank No\'e, Mohamadhosein Nosratjoo, Simon Olsson, Christoph Ortner, Aldo S. Pasos-Trejo, Anyang Peng, Eric Qu, Andrea Rizzi, Mariana Rossi, Bassem Sboui, Gregor N. C. Simm, Alexandre Tkatchenko, Jacopo Venturin, O. Anatole von Lilienfeld, William C. Witt, Brandon M. Wood, Tigany Zarrouk, Fabian Zills
arXiv Machine Learning
Sep 2

Accelerating Chemical Kinetics for Exoplanet Atmospheres using Neural Networks

The paper introduces a neural‑network based local‑box chemical kinetics solver for exoplanet atmospheres, employing a residual flow‑map architecture. It achieves microsecond‑scale inference with percent‑level accuracy across a wide range of temperatures, pressures, time steps, and compositional variations, outperforming other machine‑learning models and handling the extreme stiffness of atmospheric chemistry. The surrogate model offers a flexible, efficient alternative to classical solvers for state‑to‑state flow‑map problems in numerical simulations.

By Isaac Malsky, Xi Zhang, Tiffany Kataria, Matthew Graham, Ziyu Huang, Boris Bonev, Shang-Min Tsai, Elspeth K. H. Lee
arXiv AI
6d ago

AtomWorld-Mem: Memory-Restored World States for Long-Horizon Atomistic Evolution

AtomWorld-Mem is a memory‑restored atomistic world model that reconstructs hidden world states from incomplete crystal snapshots, enabling more accurate long‑horizon atomistic evolution. It uses spatial encoders to capture multi‑scale keyframes and integrates short‑term event memory with long‑term structural memory to predict future states. The restored state guides vacancy‑mediated events in kinetic Monte Carlo simulations, improving progress under fixed event budgets while preserving fidelity across energetic, structural, and transport observables, and it transfers zero‑shot across unseen alloy‑temperature scenarios.

By Tian Luo, Ruge Zhang, Haozhi Han, Yifrng Chen, Yunquan Zhang, Yunxin Liu, Ting Cao, Kun Li
arXiv Machine Learning
Sep 21

Transformers Discover Molecular Structure Without Graph Priors

The paper investigates whether machine learning models can uncover physical patterns in atomistic data without relying on traditional physics-based inductive biases such as geometric locality or graph structures. By training a general-purpose architecture on molecular simulation data, the authors demonstrate that the model autonomously learns interatomic interaction strengths resembling classical electrostatics and identifies interaction cutoffs aligned with established physical models. The study also reports predictable neural scaling behavior and competitive accuracy on certain metrics compared to physics-informed architectures, suggesting that explicit priors may only be necessary when empirically justified.

By Tobias Kreiman, Yutong Bai, Fadi Atieh, Elizabeth Weaver, Eric Qu, Aditi S. Krishnapriyan
arXiv AI
Jun 15

A Fixed-Point Neural Operator for Size- and Functional-Transferable Hamiltonian Prediction

arXiv:2606. 14498v1 Announce Type: cross Abstract: Predicting the Kohn-Sham Hamiltonian with machine learning can accelerate density functional theory while retaining access to molecular orbitals, energy levels, and electronic-structure observables that energy-only surrogates cannot resolve.

By Yunhong Lou, Xihang Yue, Xinran Wei, Tianqi Deng, Linchao Zhu
arXiv Machine Learning
Sep 10

Atomistic Modeling of Chemical Disorder in Materials: Bridging Conventional Methods and AI-Assisted Approaches

The article reviews strategies for modeling chemical disorder in materials, addressing the gap between experimental descriptions of disorder and the detailed configurations required for atomistic simulations and AI workflows. It evaluates traditional approaches such as mean-field theories, cluster expansion, and Monte Carlo, alongside emerging AI-powered methods like universal interatomic potentials and generative models. The review also discusses how AI can accelerate computational schemes and enable disorder-native capabilities, providing a roadmap for integrating disorder into realistic AI-accelerated materials discovery.

By Jiayu Peng, Peichen Zhong
arXiv Machine Learning
Sep 22

SPIBER: Reconstructing Free Energy Landscapes from Short, Unconverged Trajectories with Generative Flow Networks

arXiv:2609.22663v1 Announce Type: cross Abstract: Molecular systems have many degrees of freedom, but their metastable behavior can often be described by a few collective variables. Identifying these...

By Venkata Sai Sreyas Adury (Chemical Physics Program and Institute for Physical Science and Technology, University of Maryland), Pratyush Tiwary (Biophysics Program and Institute for Physical Science and Technology, University of Maryland, Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, University of Maryland Institute for Health Computing, Bethesda, USA)