arXiv Machine Learning By Ziwen Liu, Martin Weigert

Unsupervised Learning of Cell Instances with Generative Routing Pyramids

Read the original on arXiv Machine Learning →

arXiv:2608. 16810v1 Announce Type: cross Abstract: Identifying and representing object instances such as cells or nuclei is a common task in microscopy image analysis.

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arXiv AI
Jul 7

HASSL: Hierarchy-Aware Self-Supervised Learning Framework for Single Cell Microscopy

arXiv:2607. 04353v1 Announce Type: cross Abstract: Hierarchical structure is common in image data, where fine-grained clusters often merge into larger, coarser semantic groups.

By Julius Riel, Vishwa Mohan Singh, Sai Anirudh Aryasomayajula, Anuun Chinbat, Hannes Leonhard, Moritz Ladenburger, Frederik Alexander, Vishisht Choudhary, Fabio Laredo, Giacomo Masserdotti, Thorben Prein, Carsten Marr, Amirhossein Kardoost
arXiv AI
Sep 15

End-to-End Cell Detection via Instance-aware Graph Modeling

The paper introduces an end‑to‑end framework for detecting and classifying cells in pathology images by jointly modeling visual features and instance‑level interactions. It employs a dynamic graph construction module that builds cell graphs from learnable queries and an instance‑aware graph network that filters and reorganizes features, integrating appearance and relational evidence. Experiments on multiple staining protocols show the method surpasses existing approaches in both detection and classification accuracy.

By Ruochen Liu, Yalin Zheng, Jingxin Liu, Jianfeng Zhang, Shoujun Huang, Dexing Kong, Haofeng Li, Wei Lou
arXiv AI
Jul 28

scMIR: a vision-language foundation model for single-cell light microscopy image representation

arXiv:2607. 22712v1 Announce Type: cross Abstract: Single-cell light microscopy images have become an important data source for characterizing cell phenotypes, but their complexity and heterogeneity pose challenges to high-throughput automated analysis.

By Yifan Shang (Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, China, College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Jiahui Tan (College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Xiangxiang Zeng (College of Computer Science and Electronic Engineering, Hunan University, Changsha, China), Renjie Zhou (Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, China)