arXiv:2509. 00123v2 Announce Type: replace-cross Abstract: A fundamental challenge in microbial ecology is determining whether bacteria compete or cooperate in different environmental conditions.
By Oleksandr Cherednichenko, Josephine Solowiej-Wedderburn, Laura M. Carroll, Eric Libby
This paper introduces a hierarchical Bayesian multitask learning model that assumes a shared sparsity structure across different binary classification tasks. The authors develop a variational inference algorithm for efficient posterior approximation and evaluate the method on synthetic data and pooled microbiome studies. Results show superior support recovery in synthetic experiments and robust, well‑calibrated predictions with informative taxa selection in microbiome classification.
By Haonan Zhu, Andre R. Goncalves, Camilo Valdes, Hiranmayi Ranganathan, Boya Zhang, Jose Manuel Mart\'i, Car Reen Kok, Monica K. Borucki, Nisha J. Mulakken, James B. Thissen, Crystal Jaing, Alfred Hero, Nicholas A. Be
arXiv:2606. 07686v1 Announce Type: cross Abstract: Physics-Informed Neural Network (PINN) is a way of including knowledge in the form of equations in Machine Learning methods.
By Ravisha Rupasinghe, Rajith Vidanaarachchi, Asela Hevapathige, Sachith Seneviratne, Sen-Lin Tang, Saman Halgamuge
arXiv:2608. 06727v1 Announce Type: new Abstract: Transformer models for high-dimensional omics analysis process thousands of genes or pathways, although only a subset requires deep computation.
By Koushik Howlader, Tirtho Roy, Md Tauhidul Islam, Wei Le
Transformer models for high-dimensional omics analysis process thousands of genes or pathways, although only a subset requires deep computation. Mixture-of-Recursions (MoR) improves efficiency through adaptive token-choice or expert-choice routing.
arXiv:2605.28868v2 Announce Type: replace-cross
Abstract: Metagenomic taxonomic annotation is essential for interpreting complex microbial communities, yet reliable annotation remains challenging und...
By Rongye Ye, Lun Li, Zheng Luo, Yiran Zhan, Zhang Zhang, Shuhui Song