arXiv:2411. 06024v1 Announce Type: cross Abstract: The exponential growth in protein-related databases and scientific literature, combined with increasing demands for efficient biological information retrieval, has created an urgent need for unified and accessible search methods in protein engineering research.
By Yungeng Liu, Zan Chen, Yu Guang Wang, Yiqing Shen
arXiv:2607. 05443v1 Announce Type: cross Abstract: Scientists increasingly rely on open-source tools to support their research workflows, yet discovering relevant software among over 600 million GitHub repositories remains challenging.
By Nishan Pantha, Pranath Reddy Kumbam, Sajil Awale, Pushwitha Krishnappa, Muthukumaran Ramasubramanian, Nidhi Jha, Emily Foshee, Ankur Kumar, Rachel Slank, Ashkbiz Danehkar, Rahul Ramachandran
arXiv:2607. 19104v1 Announce Type: cross Abstract: Large language models (LLMs) excel at general-purpose code generation, yet how well they handle scientific code remains an open question.
By Weifeng Sun, Ye Fan, Yuchen Chen, Gou Tan, Jieke Shi, Yuan Yidi, Swee Liang Wong, Jonathan Pan, David Lo
arXiv:2608. 07038v1 Announce Type: cross Abstract: Human-Oriented Binary Reverse Engineering (HOBRE) aims to transform decompiled pseudocode into a more human-friendly representation, thereby reducing the cognitive burden of reverse analysis and improving efficiency.
By Xiuwei Shang, Li Hu, Xiao Jiang, Jieke Shi, Junda He, Zhou Yang, Shaoyin Cheng, Guoqiang Chen, Weiming Zhang, David Lo
arXiv:2602. 10908v2 Announce Type: replace-cross Abstract: We present SoftMatcha 2, an ultra-fast and flexible search algorithm that enables search over trillion-scale natural language corpora in under 0.
By Masataka Yoneda, Yusuke Matsushita, Go Kamoda, Kohei Suenaga, Takuya Akiba, Masaki Waga, Sho Yokoi
arXiv:2602. 02320v4 Announce Type: replace-cross Abstract: Molecular function is largely determined by structure.
By Feiyang Cai, Guijuan He, Yi Hu, Jingjing Wang, Joshua Luo, Tianyu Zhu, Srikanth Pilla, Gang Li, Ling Liu, Feng Luo