arXiv:2606. 09558v1 Announce Type: cross Abstract: Motivation: Transformer-based models are increasingly applied to large-scale single-cell transcriptomics, showing strong performance through self-supervised learning on millions of cells.
By Mikele Milia, Louis Fabrice Tshimanga, Henning Mueller, Manfredo Atzori, Barbara Di Camillo
arXiv:2606. 18672v1 Announce Type: cross Abstract: Single-cell RNA sequencing (scRNA-seq) serves a pivotal role in characterizing gene expression at the cellular level, enabling the identification of cell types and advancing the understanding of cellular heterogeneity.
By Jinke Wu, Yifan Wang, Siyu Yi, Caiyang Yu, Ziyue Qiao, Nan Yin, Jiancheng Lv, Wei Ju
arXiv:2606. 07760v1 Announce Type: new Abstract: Understanding cellular phenotypes and how they respond to perturbations is critical for disease biology and therapeutic design.
By Alma Andersson, Aya Abdelsalam Ismail, Edward De Brouwer, Doron Haviv, Tommaso Biancalani, Kyunghyun Cho, Gabriele Scalia, A\"icha BenTaieb, Hector Corrada Bravo
arXiv:2606. 13007v1 Announce Type: cross Abstract: Clustering is fundamental to scRNA-seq analysis, serving as a cornerstone for identifying cell populations and resolving tissue heterogeneity.
By Ping Xu, Pengjiang Li, Tian Du, Zaitian Wang, Jiawei Gu, Ziyue Qiao, Pengfei Wang, Yuanchun Zhou
arXiv:2606. 03906v1 Announce Type: new Abstract: Simultaneous measurement of multiple omics modalities in single cells enables researchers to gain a more comprehensive understanding of cellular states and regulatory mechanisms.
By Jiabei Cheng, Jingbo Zhou, Jun Xia, Changkai Li, Zhen Lei, Chang Yu, Stan Z. Li
arXiv:2608. 06659v1 Announce Type: new Abstract: This paper shows that latent-space predictive pretraining can provide a scalable route to foundation models for spatial transcriptomics.
By Haiping Liu, Qian Zhao, Lijing Lin, Jingyuan Sun, Hongpeng Zhou