arXiv:2609.00228v1 Announce Type: new
Abstract: Scientific domain entity linking (EL) differs from general domain EL because mentions and entity names often lack lexical overlap. Another challenge is...
By Md Rasel Khondokar, Qiao Qiao, Farjana Sultana Samia, Nhat Le, Yuepei Li, Qi Li
arXiv:2608. 19201v1 Announce Type: cross Abstract: Bioinformatics software and databases are essential components of modern life science research, yet their mentions in the scientific literature are often inconsistent and difficult to systematically identify at scale.
By Hao Xuan, Rithvij Pasupuleti, Ben Liu, Haishuo Sun, Jun Zhang, Zijun Yao, Cuncong Zhong
arXiv:2608. 08636v1 Announce Type: cross Abstract: Scientific named entity recognition (SciNER) plays a crucial role in information extraction and knowledge discovery from scientific texts.
By Tong Bao, Yi Zhao, Heng Zhang, Chengzhi Zhang
BioELX is a retrieve‑rerank framework for cross‑lingual biomedical entity linking that tackles two key problems: the English‑biased UMLS alias training data and the degradation caused by naïvely adding context. It fine‑tunes SapBERT_multi with Wikidata‑derived cross‑lingual alias supervision to create shared concept neighborhoods, and then reranks candidates using pretrained LLMs with mention‑anchored prompting to focus on the target mention. Experiments demonstrate state‑of‑the‑art performance on four benchmarks, improving Recall@1 by 4.8–18.2 percentage points without task‑specific annotations.
By Yi Wang, Corina Dima, Liangyu Zhong, Steffen Staab
The paper introduces a weakly supervised framework for extracting dataset mentions from forced displacement and Fragile, Conflict, and Violence (FCV) documents. It uses a lightweight model trained on general research literature to generate candidate mentions, which are then refined by a large language model that validates or rejects them and corrects boundaries. The refined annotations are augmented with synthetic and contrastive examples to fine‑tune the model, achieving 74.1% precision and 70.5% recall on a benchmark of 1,706 passages, with higher precision (89.5%) on passages that contain dataset references.
By Rafael Macalaba, Aivin V. Solatorio, Patrick Michael Brock, Olivier Dupriez
arXiv:2609.23231v1 Announce Type: new
Abstract: Cross-lingual information retrieval (CLIR) is increasingly important in multi-national industries, where critical technical evidence may exist in a dif...
By Mahdi Astaraki, Mohammad Khodadad, Reza Namazi, Mohammad Arshi Saloot, Amir Reza Behzad Moghadam, Hamidreza Mahyar, Soheila Samiee