LLMs Interpret, Embeddings Organize, Graphs Emerge: Agent-Driven Compilation of Scientific Knowledge
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arXiv:2606. 13669v1 Announce Type: new Abstract: Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration.
arXiv:2609.27297v2 Announce Type: replace Abstract: Agentic science envisions many autonomous agents investigating concurrently while building on a shared, evolving body of scientific knowledge. This...
arXiv:2608. 15193v1 Announce Type: cross Abstract: As large language model (LLM) agents are increasingly adopted in scientific research, external knowledge bases, knowledge graphs, and long-term memory have improved information retrieval and task continuity.
arXiv:2607. 17917v1 Announce Type: new Abstract: Scientific Reasoning Graph Extraction (SRGE) aims to recover explicit links among observations, evidence, intermediate claims, and paper-level conclusions.
HyGRAIL is a framework for discovering scientific hypotheses in incomplete knowledge graphs by combining a graph neural network (GNN) triage with large language model (LLM) review. The GNN scores candidate hypotheses and routes only ambiguous cases to the LLM, which receives structured evidence from the graph converted into natural language. Experiments on MatKG show HyGRAIL achieves the highest F1 score, improves over baselines, and cuts LLM calls by over 54%.
The paper presents an ontology‑guided framework that uses specialized agents and large language models to extract, verify, and link factual triples from scientific publications, ensuring semantic consistency and traceability. Applied to 2,000 climate science papers, the system produced an ontology‑grounded knowledge graph with 133,990 nodes and 755,308 relations, achieving high agreement with human annotators and a 98.96% correctness rate among validated triples. The pipeline and resulting graph are publicly released for community use.