arXiv AI By Shi-Ju Ran, Kun Zhang, Xi Wu, Liu-Si Yang, Wen-Jun Li

LLMs Interpret, Embeddings Organize, Graphs Emerge: Agent-Driven Compilation of Scientific Knowledge

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arXiv AI
Jun 12

Agents-K1: Towards Agent-native Knowledge Orchestration

arXiv:2606. 13669v1 Announce Type: new Abstract: Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration.

By Zongsheng Cao, Bihao Zhan, Jinxin Shi, Jiong Wang, Fangchen Yu, Zhijie Zhong, Zijie Guo, Tianshuo Peng, Zhuo Liu, Yi Xie, Xiang Zhuang, Yue Fan, Runmin Ma, Shiyang Feng, Xiangchao Yan, Anran Liu, Peng Ye, Wenlong Zhang, Shufei Zhang, Chunfeng Song, Fenghua Ling, Jie Zhou, Liang He, Bo Zhang, Lei Bai
arXiv AI
Oct 1

Large Knowledge Model: A Knowledge Foundation for Agentic Science at Scale

arXiv:2609.27297v2 Announce Type: replace Abstract: Agentic science envisions many autonomous agents investigating concurrently while building on a shared, evolving body of scientific knowledge. This...

By Yuan Huang, Sihan Hu, Hongyu Gu, Chao Ma, Jiaxing Zhang, Zhiyong Zou, Caiyu Fan, Yan Xiao, Mingjun Xu, Chenyu Xie, Mingzhen Ju, Zhehao Ma, Qi Zhang, Baozong Wang, Yu Li, Zhiyuan Yao, Ruoxue Liao, Xinyu Li, Linfeng Zhang, Kun Chen, Weinan E
arXiv Computation and Language
Sep 3

HyGRAIL: Cost-Aware and Evidence-Grounded Scientific Hypothesis Discovery over Knowledge Graphs

HyGRAIL is a framework for discovering scientific hypotheses in incomplete knowledge graphs by combining a graph neural network (GNN) triage with large language model (LLM) review. The GNN scores candidate hypotheses and routes only ambiguous cases to the LLM, which receives structured evidence from the graph converted into natural language. Experiments on MatKG show HyGRAIL achieves the highest F1 score, improves over baselines, and cuts LLM calls by over 54%.

By Yihang Sun, Zhihan Zhu, Zhiyuan Jiang, Jingyi Ge, Zixuan Li, Jiaxuan You
arXiv AI
Oct 26

Ontology-Guided Knowledge Graph Construction from Structured Metadata and Climate Science Publications

The paper presents an ontology‑guided framework that uses specialized agents and large language models to extract, verify, and link factual triples from scientific publications, ensuring semantic consistency and traceability. Applied to 2,000 climate science papers, the system produced an ontology‑grounded knowledge graph with 133,990 nodes and 755,308 relations, achieving high agreement with human annotators and a 98.96% correctness rate among validated triples. The pipeline and resulting graph are publicly released for community use.

By Aayush Acharya, Qi Zhang, Eduard Dragut, Longin Jan Latecki