arXiv Machine Learning By Xuejun Sun, Yiran Song, Xiaochen Zhou, Ruilie Cai, Yu Zhang, Xinyi Li, Rui Peng, Jialiu Xie, Yuanyuan Yan, Muyao Tang, Prem Lakshmanane, Baiming Zou, James S. Hagood, Raymond J. Pickles, Didong Li, Fei Zou, Xiaojing Zheng

HR-VILAGE-3K3M: A Human Respiratory Viral Immunization Longitudinal Gene Expression Dataset for Systems Immunity

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arXiv:2505. 14725v2 Announce Type: replace-cross Abstract: Respiratory viral infections pose a global health burden, yet the cellular immune mechanisms underlying protection and pathology remain unclear.

Machine-generated by The Flow from the publisher's headline and feed description — not written or checked by a human. The full article lives at arXiv Machine Learning.

arXiv Machine Learning
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Transcriptomic Models for Immunotherapy Response Prediction Show Limited Cross-cohort Generalisability

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arXiv AI
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ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics

arXiv:2603. 11872v3 Announce Type: replace-cross Abstract: Translating single-cell RNA sequencing (scRNA-seq) data into mechanistic biological hypotheses remains a critical bottleneck, as agentic AI systems lack direct access to transcriptomic representations while expression foundation models remain opaque to natural language.

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arXiv AI
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Data-Efficient Multimodal Alignment for Histopathology-based Molecular Prediction

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arXiv AI
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SubQuad: Near-Quadratic-Free Structure Inference with Distribution-Balanced Objectives in Adaptive Receptor framework

arXiv:2602. 17330v5 Announce Type: replace-cross Abstract: Comparative analysis of adaptive immune repertoires at population scale is hampered by two practical bottlenecks: the near-quadratic cost of pairwise affinity evaluations and dataset imbalances that obscure clinically important minority clonotypes.

By Rong Fu, Zijian Zhang, Kun Liu, Jiekai Wu, Xianda Li, Simon Fong