arXiv Machine Learning By Gonzalo A. Ruz

Continuous surrogates versus threshold Boolean networks for modeling Arabidopsis ISR gene regulation

Read the original on arXiv Machine Learning →

arXiv:2607. 23289v1 Announce Type: cross Abstract: Gene regulatory network modeling often requires balancing predictive accuracy and mechanistic interpretability.

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arXiv AI
Aug 10

Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling

arXiv:2608. 06824v1 Announce Type: cross Abstract: A central task in virtual cell modeling is predicting single-cell transcriptional responses to unseen genetic perturbations and drug combinations, and biological networks provide valuable priors on gene relationships.

By Quanquan Li, Yihe Chi, Liuyang Song, Hongbo Zhang, Jingyu Li, Xidong Xi, Conghua Wei, Yijie Sun, Yu Chen, Xin Liu, Qi Hu, Jing Ke, Guitao Cao