Organon is a recursively self‑improving agent designed for scientific discovery that autonomously revises its search strategies, population management, diagnostics, memory, and worker coordination during execution. By diagnosing and correcting its own adaptation procedures, the agent continuously refines the mechanisms guiding its future self‑improvement. Across 21 computational discovery tasks—including algorithm design, GPU kernel optimization, and systems optimization—Organon outperforms competing frameworks, achieving a 20.5% mean performance gain on ALE‑Bench Lite and up to 1.67× speedups on KernelBench.
By Cheikh Ahmed, Zhiyu Zhang, Kun Mao, Yong Zhang, Zirui Zhou
arXiv:2607. 28437v1 Announce Type: new Abstract: Molecular optimization is commonly performed under a limited oracle budget, which makes deciding what to evaluate as important as deciding what to generate.
By Jiannan Yang, Veronika Thost, Xiang Ling, Tengfei Ma
OptiCom introduces a unified framework for state-conditioned composition in large language model (LLM)-driven optimization. It models LLM optimizers within a shared configuration space (artifact, query, operator, evaluation, memory, strategy) and uses an Optimization Controller to dynamically compose mechanisms while a Strategy Adapter refines long-term preferences. Experiments on 32 benchmark groups show OptiCom outperforms 14 configurations, achieving the top score in 23 groups.
By Chenxing Wei, Sichen Liu, Lizhao Liu, Ningyuan Sun, Chen Bingzhou, Ying He, Bo Jiang, Fei Yu, Yao Shu
arXiv:2606. 00008v1 Announce Type: new Abstract: Multi-objective molecular optimization requires searching vast chemical spaces under conflicting objectives, where early design decisions strongly constrain downstream outcomes.
By Jia Zhang, Tengfei Ma, Tianle Li, Daojian Zeng, Xieping Gao, Xiangxiang Zeng
arXiv:2607. 04108v1 Announce Type: new Abstract: Large language models are increasingly used as evolutionary engines for scientific discovery: generate candidates, select winners, feed them back as parents, and repeat.
By Pan Li
PMO-Dock introduces a standardized benchmark for docking‑based molecular optimization, comprising 25 tasks that span hit generation, lead optimization, and a specificity task that rewards strong on‑target binding while penalizing off‑target interactions. The protocol separates model development from final evaluation, using validation tasks for hyperparameter tuning and held‑out test tasks evaluated under a strict oracle budget to mimic realistic drug‑discovery constraints. Four diverse methods—Saturn, GenMol, Genetic‑guided GFlowNet, and ChemLlama—were benchmarked, revealing no single method dominates across all tasks and highlighting limited hyperparameter transferability, which underscores the need for method‑dependent selection strategies.
By Gor Simonyan, Tatevik Abrahamyan, Narek Abelyan, Tigran Fahradyan, Hrant Khachatrian