arXiv Machine Learning

Transfer Learning for FHIR Questionnaire Terminology Binding

arXiv:2606. 15449v1 Announce Type: cross Abstract: Electronic prior authorization workflows require FHIR Questionnaire items to carry LOINC codes, yet most items in the HL7 Da Vinci CDS-Library lack these bindings.

arXiv Computation and Language
Sep 17

English Word Sense Disambiguation in 2026: When the Labels Become the Bottleneck

The paper reports that in English all‑words word sense disambiguation (WSD), the scarcity of high‑quality labels—not the models—has become the limiting factor. The authors introduce lexEN, a human‑adjudicated correction layer over the Maru2022 ALL_NEW benchmark, and SenseBench, a living leaderboard for LLM WSD evaluation. They show that frontier large language models reach about 95 % accuracy on lexEN‑v1, that relabeling corpora with these models improves downstream systems, and that fine‑grained WordNet senses are often ill‑posed, with coarsening improving both annotator agreement and model performance. "whyItMatters":"The study highlights that improving label quality and managing annotation costs are now the critical challenges for advancing WSD performance, as model accuracy is already near its theoretical ceiling."

By Vassili Philippov, Amro Salman, Dmitrii Andreev, Penny Hands, Emil Kaiumov, Pavel Katunin, Anton Nikolaev
arXiv AI
Aug 13

A corpus-specific clinical RAG system matches or outperforms newer frontier LLMs on HealthBench

arXiv:2608. 12138v1 Announce Type: cross Abstract: General-purpose large language models (LLMs) have recently been reported to match or exceed specialized clinical AI tools on medical benchmarks, but such comparisons draw on a narrow set of systems and on benchmarks developed largely in high-income settings.

By Praveen Reddy, Charuta Mandke, Suvrankar Datta, Sarah Khan, Siddharth Reddy Anthireddy, Shitij Arora, Vishal Singh
arXiv AI
Sep 15

Option-Aware Retrieval and Task-Specific VLM Adaptation for Medical VQA

The paper presents a system for the MedReason 2026 challenge that tackles both multiple‑choice and open‑ended medical visual question answering using offline, containerized inference. Key findings include that comparing answer semantics rather than labels boosts retrieval‑only accuracy from 20.0 % to 57.5 % on a 200‑case holdout, and that varying the number of in‑prompt retrieved examples has minimal impact on final accuracy (93.5 %–94.0 %). The final system achieves 94.0 % MCQ accuracy on the development set and 93.20 % on the official pre‑evaluation, far surpassing the off‑the‑shelf baseline. "whyItMatters":"The results demonstrate that semantic‑aware retrieval and careful adapter tuning can dramatically improve medical VQA performance, offering a practical approach for high‑accuracy, offline inference in clinical settings."

By Tristan Kirscher (ICube, Institut Strauss), Niklas C. Koser (CAU), Soren Pirk (CAU)
arXiv AI
Aug 24

Inhibitory Attention for Clinical Long-Context Reasoning: Characterizing and Mitigating Lost-in-the-Middle Effects in EHR Processing

The paper identifies a new problem in clinical natural language processing called the clinical lost‑in‑the‑middle (CLitM) effect, where large language models perform poorly on information located near the center of long electronic health record (EHR) documents. Using the MedAlign dataset, the authors quantify a 21.9‑percentage‑point accuracy gap across 2,196 instruction‑response pairs and six models, showing that most critical facts lie in the CLitM trough. They propose Query‑Conditioned Clinical Suppression (QCCS), a lightweight context‑selection gate that outperforms traditional retrieval methods (BM25, dense retrieval, cross‑encoder reranking) on a held‑out set of 83 instructions, achieving up to 25.3% accuracy for middle‑position queries. whyItMatters":"The study demonstrates that standard retrieval strategies fail to reliably surface central clinical information, and that a query‑aligned selection mechanism can substantially improve model performance on critical EHR data."

By Sanjay Basu
arXiv AI
Sep 4

SHELF: A Synthetic Harness for Multi-Task Bibliographic Benchmarking

SHELF is a Python system that creates synthetic, controlled benchmark data for evaluating large language models on bibliographic tasks such as classification, clustering, retrieval, pair classification, and instruction retrieval. It generates 62,899 model-written documents based on Library of Congress vocabularies and compares methods like TF, TF‑IDF, BM25, popular encoders, and zero‑shot decoders, reporting performance metrics such as 0.8887 for subject classification and 0.2605 for genre‑form classification. The tool also allows independent variation of bibliographic facets and can produce unseen documents beyond a model’s training cutoff, with results indicating that model rankings transfer more reliably than absolute scores when compared to other benchmarks.

By Michael J. Bommarito II
Hugging Face Trending Papers
Sep 2

SHELF: A Synthetic Harness for Multi-Task Bibliographic Benchmarking

SHELF is a Python system that creates controlled benchmark data and evaluation tasks for libraries and archives, using labelled taxonomies, writing specifications, and a generation budget. It generates 62,899 model-written documents based on Library of Congress vocabularies and supports tasks such as classification, clustering, retrieval, pair classification, and instruction retrieval. The release compares various methods—including TF, TF-IDF, BM25, popular encoders, and zero-shot decoders—showing that sparse methods remain competitive on classification and that SHELF can vary bibliographic facets independently while generating new, verifiably unseen documents.

arXiv AI
Jul 20

Ruling Out to Rule In: Contrastive Hypothesis Retrieval for Medical Question Answering

arXiv:2604. 04593v2 Announce Type: replace-cross Abstract: Retrieval-augmented generation (RAG) grounds large language models in external medical knowledge, yet standard retrievers frequently surface hard negatives that are semantically close to the query but describe clinically distinct conditions.

By Byeolhee Kim, Min-Kyung Kim, Young-Hak Kim, Tae-Joon Jeon
arXiv AI
Sep 4

STAIR (STructure Aware Information Retriever): A novel dataset and LLM based retriever for document structure augmentation

The paper introduces STAIR, a retrieval system that uses a document’s Table of Contents to guide large language models in accessing global structure, thereby reducing hallucinations in Retrieval Augmented Generation. Experiments with a fine‑tuned Differentiable Search Index show that ToC‑based retrieval yields a low hallucination rate (<0.05%) and improves Recall@1 to 82.6% on the newly released SearchTome benchmark, outperforming baselines like BM25, DPR, and Mistral. The authors also release SearchTome, a diverse dataset of 18 books across six domains, to encourage further research in ToC‑based retrieval.

By Vineet Kumar, Meghanadh Pulivarthi, vishwajeet kumar, Jaydeep Sen, Riyaz Ahmad Bhat, Sachindra Joshi
Hugging Face Trending Papers
Jul 30

DS@GT ARC at ImageCLEFmedical 2026: Architectural Diversity for Concept Detection and Foundation-Model Scaling for Caption Prediction in Medical Image Analysis

We describe the DS@GT submissions to the ImageCLEFmedical Caption 2026 challenge, which continues a long-running benchmark on the ROCOv2 dataset with two tracks: Concept Detection (Task 1), assigning UMLS Concept Unique Identifiers (CUIs) to radiology images, and Caption Prediction (Task 2), generating natural-language captions. For Task 1, our primary submission was a three-way late-fusion ensemble of ConvNeXt-V2, BiomedCLIP ViT-B/16, and DenseNet-169 with a regularized ''Honest Threshold Tuning'' procedure designed to avoid validation overfitting on rare concepts; this submission ranked first on the official submission with a primary $F_1$ of $0.