The paper introduces Gromov-Monge Flow Matching, a method that incorporates permutation-equivariance into generative graph models by aligning graph pairs up to node relabeling using the Gromov–Monge distance. It shows theoretically that quotient couplings can be lifted to aligned representatives without extra cost and that symmetrization yields equivariant flow-matching minimizers, even for categorical endpoints. Practically, the authors build minibatch couplings with Gromov–Wasserstein relaxations and optional outer assignments, improving sample quality in continuous graph and categorical molecular generation while remaining compatible with standard equivariant architectures.
arXiv:2607. 19083v1 Announce Type: new Abstract: Equivariant graph neural networks provide a powerful modeling language for three-dimensional scientific data, but their reuse is often limited by implementations tied to specific tasks, outputs, and training regimes.
arXiv:2602. 18084v2 Announce Type: replace Abstract: Equivariance is central to graph generative models, as it ensures the model respects the permutation symmetry of graphs.
arXiv:2603. 23398v3 Announce Type: replace-cross Abstract: Generative modeling of discrete data, such as graphs, underpins many scientific and industrial applications, including molecular discovery and materials design.
arXiv:2608.29635v1 Announce Type: new Abstract: We study unsupervised hypergraph alignment, where the goal is to infer node correspondences between two hypergraphs using only structural information,...
arXiv:2608. 04234v1 Announce Type: cross Abstract: We study the problem of aligning data from multiple modalities into a shared representation space, focusing on settings where strong pretrained unimodal encoders are available but cross-modal paired data are scarce.
arXiv:2603. 10395v2 Announce Type: replace Abstract: Graph generation is a fundamental task with broad applications, such as drug discovery.
arXiv:2606. 02223v1 Announce Type: new Abstract: Estimating the generative mechanism of large-scale networks is a fundamental challenge in statistical machine learning.
arXiv:2510.07289v2 Announce Type: replace Abstract: Molecular graph representation learning is widely used in chemical and biomedical research. While pre-trained 2D graph encoders have demonstrated s...
arXiv:2601. 22107v2 Announce Type: replace Abstract: We introduce \textit{Prior-Informed Flow Matching (PIFM)}, a conditional flow model for graph reconstruction.
arXiv:2410. 01244v2 Announce Type: replace-cross Abstract: We introduce a novel Wasserstein-1 ($W_1$) path-space divergence for stochastic and deterministic dynamics and establish a Wasserstein Uncertainty Propagation (WUP) theorem that bounds the $W_1$ distance between terminal distributions by the proposed divergence, equivalently characterized by a weighted $L^2$ discrepancy between the underlying drifts and the $W_1$ distance between their initial measures.
arXiv:2510. 03086v2 Announce Type: replace Abstract: For the combinatorial graph alignment problem (GAP) -- finding the node correspondence that maximizes the number of common edges (nce) between two unlabeled graphs -- properly initialized FAQ remains a strong classical baseline, while existing GNN approaches struggle in the purely structural setting.
arXiv:2607. 27431v1 Announce Type: new Abstract: Generative modeling of protein backbones promises the de novo design of proteins with prescribed structural and functional properties.