arXiv:2607. 00947v1 Announce Type: new Abstract: Generative models learn data distributions that reside on a low-dimensional manifold within a higher-dimensional ambient space.
By Ludwig Winkler, Andrew Leaver-Fay, Joseph Kleinhenz, Pan Kessel
arXiv:2510.03095v4 Announce Type: replace
Abstract: Diffusion- and flow-based generative models have recently demonstrated strong performance in protein backbone generation tasks, offering unpreceden...
By Liyang Xie, Haoran Zhang, Zhendong Wang, Wesley Tansey, Mingyuan Zhou
arXiv:2606. 19377v1 Announce Type: cross Abstract: Computational enzyme design requires generating proteins that scaffold catalytic residues and ligands, a task that demands both geometric accuracy and structural diversity from the underlying generative model.
By Nicholas J. Williams, Ward Haddadin, Matteo P. Ferla, Constantin Schneider, Nicholas B. Woodall, Ruby Sedgwick, Christian D. Madsen, Andrew L. Hopkins, Edward O. Pyzer-Knapp
arXiv:2605.06140v3 Announce Type: replace-cross
Abstract: Generative modeling of physical systems, such as molecules, requires learning distributions that are invariant under global symmetries, such...
By Samir Darouich, Vinh Tong, Llu\'is Pastor-P\'erez, Tanja Bien, Loay Mualem, Mathias Niepert
arXiv:2504. 02839v2 Announce Type: replace-cross Abstract: Proteins move and deform to ensure their biological functions.
By Valentin Lombard, Julien Nguyen Van, Sergei Grudinin, Elodie Laine
arXiv:2606. 08375v1 Announce Type: new Abstract: All-atom generative modeling of 3D biomolecular complexes has emerged as the dominant paradigm for predicting the structure of proteins and protein-ligand systems.
By Gianluca Scarpellini, Ron Shprints, Peter Holderrieth, Juno Nam, Pranav Murugan, Rafael G\'omez-Bombarelli, Tommi Jaakola, Maruan Al-Shedivat, Nicholas Matthew Boffi, Avishek Joey Bose