arXiv AI

CrystalReasoner: Reasoning and RL for Property-Conditioned Crystal Structure Generation

CrystalReasoner (CrysReas) is an end‑to‑end large language model framework that generates crystal structures from natural language instructions by incorporating physical priors as thinking tokens—such as crystallographic symmetry, local coordination, and predicted properties—before producing atomic coordinates. It then uses reinforcement learning with a multi‑objective reward to enforce physical validity, chemical consistency, and thermodynamic stability, and includes task‑specific rewards for property‑conditioned generation. Empirical results show that CrysReas outperforms prior methods, triples the S.U.N. ratio, and adapts reasoning length with increasing atom counts.

arXiv AI
Jun 9

MatMind: A Structure-Activity Knowledge-Driven Generative Foundation Model for Materials Science

arXiv:2606. 07712v1 Announce Type: cross Abstract: Progress in AI-driven crystal materials science has so far been carried by narrow architectures purpose-built for individual tasks -- graph neural networks for property prediction, diffusion and flow-matching models for crystal generation -- each excelling within its niche yet unable to act as a shared backbone across the full spectrum of materials problems.

By Zhan'ao Yao, Boxuan Zhang, Jingyuan Shu, Xiaoyu Wu, Rongyan Wang, Linjing Li, Dajun Zeng, Yudong Yao, Tingwei Chen, Youwei Wang, Xiaolin Zhao, Jiahui Shi, Jianjun Liu
arXiv Machine Learning
Sep 17

Robust and Efficient AI Frameworks for Scalable Material Design and Property Prediction

The thesis presents AI frameworks that accelerate crystalline materials discovery by tackling both crystal property prediction and crystal structure generation. It introduces CrysXPP, CrysGNN, and CrysMMNet for efficient, data‑sparse property prediction using graph autoencoding, self‑supervised pretraining, and multimodal learning. For generation, TGDMat is a text‑guided diffusion model that jointly learns lattice parameters, atomic types, and coordinates, enabling valid, stable, and conditionally generated periodic materials.

By Kishalay Das
arXiv Machine Learning
Jun 9

Enhancing Spatial Reasoning in Large Language Models for Metal-Organic Frameworks Structure Prediction

arXiv:2601. 09285v2 Announce Type: replace Abstract: Metal-organic frameworks (MOFs) are porous crystalline materials with broad applications such as carbon capture and drug delivery, yet accurately predicting their 3D structures remains a significant challenge.

By Mianzhi Pan, JianFei Li, Peishuo Liu, Botian Wang, Yawen Ouyang, Yiming Rong, Hao Zhou, Jianbing Zhang
arXiv Machine Learning
Oct 2

Riemannian Flow Models with Reinforcement Learning for Molecular Crystal Structure Prediction

The paper introduces CG-OMatG, an equivariant Riemannian flow-based generative model that predicts molecular crystal structures using a coarse-grained, hierarchical representation. It treats molecules as rigid bodies, performs inter- and intra-molecular message passing, and learns to reconstruct molecule centroids, orientations, and lattice parameters conditioned on chemical species and conformer geometry. The model is trained on OMC25 and CSD datasets, fine-tuned with policy gradient reinforcement learning to favor low-energy structures, and validated against a CSP blind test benchmark using COMPACK packing-similarity analysis.

By Thomas Egg, Harry Winston Sullivan, Maya M. Martirossyan, Philipp H\"ollmer, Cheng Zeng, Adrian Roitberg, Mingjie Liu, Richard Hennig, Sapna Sarupria, Ellad B. Tadmor, Stefano Martiniani
arXiv AI
Sep 30

Where Should Physics Enter a Molecular Crystal Generator?

The paper introduces CrystAF, an all‑atom crystal flow‑map generation model, and evaluates where physics should be incorporated into generative crystal structure models. By applying physics‑informed post‑training, the authors improve molecular validity and crystal packing without altering sampling speed, while inference‑time corrections further refine the structures. The study demonstrates that post‑training and inference‑time physics are complementary, and that the post‑training approach transfers to other generators such as Clari‑M and MolCrystalFlow.

By Haocheng Tang, Junmei Wang, Wengong Jin
arXiv Machine Learning
Jun 2

Towards Automated Discovery: A Review of Generative Models, Multimodal Learning and Closed-Loop Workflows in Inverse Materials Design

arXiv:2606. 02507v1 Announce Type: cross Abstract: Inverse materials design is shifting materials discovery from forward prediction to targeted proposal of candidates that satisfy objectives under physical constraints.

By Anand Babu, Rog\'erio Almeida Gouv\^ea, Gian-Marco Rignanese
arXiv AI
Jul 9

Accurate, Interdisciplinary and Transparent Structure-property Understanding with Deep Native Structural Reasoning

arXiv:2607. 07708v1 Announce Type: cross Abstract: Structure-property relationships are foundational to biology, chemistry and materials science, where function, reactivity and physical response emerge from spatial, chemical and periodic organization.

By Chen Tang, Yizhou Wang, Jianyu Wu, Lintao Wang, Shixiang Tang, Pengze Li, Encheng Su, Jun Yao, Jiabei Xiao, Yuqi Shi, Jielan Li, Hongxia Hao, Zhangyang Gao, Fang Wu, Ben Fei, Xiangyu Yue, Pan Tan, Bozitao Zhong, Jinouwen Zhang, Aoran Wang, Yan Lu, Jiaheng Liu, Xinzhu Ma, Liang Hong, Mingyue Zheng, Phil Torr, Bowen Zhou, Wanli Ouyang, Lei Bai
arXiv Machine Learning
Jun 15

LapidaryEngine: Fully Conversational Crystal Generation

arXiv:2606. 14215v1 Announce Type: new Abstract: The emergence of Large Language Models (LLMs) has inspired the vision of generating bespoke crystal materials directly from natural-language instructions, enabling users to design materials through intuitive, conversational interaction.

By Yusei Ito, Yuta Suzuki, Tomoya Murata, Masaki Adachi