arXiv AI

From Document Silos to Process Intelligence: A Multi-Layer Knowledge Graph for CMC Process Development

The paper introduces a modular agentic-AI platform that transforms heterogeneous CMC process-development documents into a dual-layer knowledge graph. The base layer creates a lexical Document‑Section‑Chunk hierarchy, while the intelligence layer extracts ontology‑aligned entities and links cross‑document concepts, all anchored by provenance. LLM agents navigate these layers to answer queries, and a novel three‑tier evaluation protocol demonstrates high retrieval‑augmented generation performance on proprietary data from a Sanofi program.

arXiv AI
Aug 3

An Ontology-Guided, Deduplication-Aware Extraction Layer for Knowledge Graph Construction from Heterogeneous Documents

arXiv:2607. 28662v1 Announce Type: new Abstract: Large language models extract entities and relationships from unstructured documents fluently but inconsistently: type vocabularies fracture across documents, the same person surfaces under several name variants, relationships duplicate, and distinct individuals who share a name risk silent conflation.

By Vaibhav Dangaich, Kevin Lewis, Kundeshwar Pundalik
arXiv AI
Jul 17

OmniaBench: Benchmarking General AI Agents Across Diverse Scenarios

arXiv:2607. 14989v1 Announce Type: cross Abstract: Large language models are increasingly evolving from text generators into general agents capable of understanding user requests, invoking external tools, and completing complex tasks through interaction.

By Chengyu Shen, Yujie Fu, Gangtao Xin, Yanheng Hou, Wenlong Fei, Guojie Zhu, Jiawei Li, Hongcheng Gao, Runming He, Zhen Hao Wong, Meiyi Qiang, Hao Liang, Zhao Cao, Hao Jiang, Chong Chen, Wentao Zhang
arXiv AI
Jun 12

Agents-K1: Towards Agent-native Knowledge Orchestration

arXiv:2606. 13669v1 Announce Type: new Abstract: Current LLM-based research agents have advanced through agent orchestration, yet largely overlook scientific knowledge orchestration.

By Zongsheng Cao, Bihao Zhan, Jinxin Shi, Jiong Wang, Fangchen Yu, Zhijie Zhong, Zijie Guo, Tianshuo Peng, Zhuo Liu, Yi Xie, Xiang Zhuang, Yue Fan, Runmin Ma, Shiyang Feng, Xiangchao Yan, Anran Liu, Peng Ye, Wenlong Zhang, Shufei Zhang, Chunfeng Song, Fenghua Ling, Jie Zhou, Liang He, Bo Zhang, Lei Bai
arXiv Computation and Language
Sep 1

Agent Zero Memory: Provenance-Aware Long-Term Memory for LLM Agents

Agent Zero Memory is a provenance‑aware long‑term memory system for large language model agents that distills user interactions into three parallel memory structures: an episodic timeline, an associative entity‑event knowledge graph, and a semantic, citation‑locked hierarchical documentary memory. Retrieval is performed via an intent gate, source router, and concurrent searches across the three systems, producing integrated, cited answers that exclude fabrication and require evidence the reader has opened. The system achieves state‑of‑the‑art performance on LongMemEval (95.60%) and LoCoMo (93.60%) while offering a favorable accuracy‑cost‑latency trade‑off across multiple backbone LLMs.

By Ming Wu, Pengyuan Zhu
arXiv AI
Sep 15

ClinAgent: A ReAct-Based Agent for Conversational Access to Clinical Trial Information

ClinAgent is a conversational system that uses a ReAct-based LLM agent to retrieve and synthesize clinical trial information from multiple sources such as ClinicalTrials.gov, PubMed, and a local dataset. The agent iteratively reasons over user queries, selects appropriate tools, and refines its actions to provide grounded, up-to-date responses in natural language across multi-turn interactions. Evaluation across three phases shows that DeepSeek (thinking mode) excels in planning quality while Gemini 3.0 Flash delivers the highest overall performance and expert ratings, demonstrating the promise of agentic AI for improving clinical trial data access.

By Antonino Vaccarella, Riccardo Cantini, Domenico Talia, Paolo Trunfio, Marianna Talia, Rosamaria Lappano, Marcello Maggiolini
arXiv AI
Sep 1

From Analytics to Tumor Boards: An Evidence-Linked Multi-Agent Workflow for Oncology Feature Extraction

arXiv:2608.28974v1 Announce Type: new Abstract: Clinically relevant oncology information is distributed across heterogeneous, longitudinal documentation, creating substantial abstraction burden and r...

By Daniel Kang, Michelle Hu, Soorya Ram Shimgekar, Shayan Vassef, Yufan Wang, Anit Kumar Sahu, Munmun De Choudhury, Vedant Das Swain, Christian Poellabauer, Li Yan Khor, Koustuv Saha, Robert Wojciechowski, Elliot Kidd, Piyum Zonooz, Navin Kumar