arXiv Machine Learning

Electron-Density-Informed Molecular Property Prediction Using Surrogate Functionals

The paper introduces a machine‑learning approach that incorporates the ground‑state electron density as input while enforcing it to be the minimum of a surrogate functional derived from orbital‑free density functional theory. This method outperforms state‑of‑the‑art models on six of seven extensive properties in the QM9 dataset and shows better generalization to larger molecules in the QM40 dataset. Models that use the density without enforcing the surrogate functional constraints perform worse on all extensive properties of both datasets.

arXiv Machine Learning
Jul 23

OrbitAll: A Unified Quantum Mechanical Representation Deep Learning Framework for All Molecular Systems

arXiv:2507. 03853v2 Announce Type: replace Abstract: We introduce OrbitAll, a geometry- and physics-informed deep learning framework that encodes any molecular system with arbitrary charges, spins, and environmental effects using electronic structure information.

By Beom Seok Kang, Vignesh C. Bhethanabotla, Amin Tavakoli, Maurice D. Hanisch, Arimitsu Horikawa-Strakovsky, Miguel Nouman, Danish Khan, William A. Goddard III, Anima Anandkumar
arXiv AI
Oct 5

Equivariant Flow Matching for Electron Density Prediction

The paper introduces OrbFlow, an SE(3)-equivariant generative model that predicts Gaussian-type orbital coefficients for electron density using flow matching. By training with a two-phase trajectory curriculum, OrbFlow improves accuracy on QM9 and MD benchmarks, reducing density errors significantly compared to previous models. The predicted densities also accelerate self-consistent field procedures, cutting iterations by up to 68% and accurately reproducing dipole and quadrupole moments without additional SCF calculations.

By Chenxing Liang, Chengdong Wang, Yuchao Lin, Xiaofeng Qian, Shuiwang Ji
arXiv AI
5d ago

Can Machine Learning Potentials Be More Accurate Than the Methods They Are Trained On?

The article discusses how machine learning potentials (MLPs) can surpass the accuracy of the quantum‑chemical methods they are trained on by generalizing across a third space—different quantum‑chemical methods. It proposes the development of method‑transferable MLPs that predict properties at unseen methods, demonstrating that such models can outperform any of their training methods in both density‑functional and wavefunction‑based theories. The authors argue that pursuing accuracy beyond the training methods could enable universal MLPs to exceed single‑method models, influencing dataset construction and model evaluation to push chemical simulation limits.

By Pavlo O. Dral, Yi-Fan Hou, Yuxinxin Chen, Hassan Nawaz, Mateusz Witkowski, Szymon \'Smiga, Ireneusz Grabowski
arXiv AI
Jun 15

A Fixed-Point Neural Operator for Size- and Functional-Transferable Hamiltonian Prediction

arXiv:2606. 14498v1 Announce Type: cross Abstract: Predicting the Kohn-Sham Hamiltonian with machine learning can accelerate density functional theory while retaining access to molecular orbitals, energy levels, and electronic-structure observables that energy-only surrogates cannot resolve.

By Yunhong Lou, Xihang Yue, Xinran Wei, Tianqi Deng, Linchao Zhu
arXiv Machine Learning
Oct 5

Electronic Density versus Geometry for Machine-Learned Molecular Absorption Spectra

The study compares two machine‑learning approaches for predicting molecular absorption spectra: one that uses the ground‑state electron density as input and another that uses molecular geometry. Using a dataset of 6,874 molecules from QM7, the density‑based convolutional neural network achieved a higher validation correlation (0.9926) than the best geometry‑based graph model (0.9795), reducing residual decorrelation by about 64%. The authors argue that the density, which encodes bonding, charge localisation, and electronic delocalisation, provides a more informative starting point for ML models despite the modest cost of an additional DFT calculation. whyItMatters":"The results suggest that incorporating ground‑state electron density into ML models can significantly improve the accuracy of predicted absorption spectra, potentially enabling faster and more reliable spectroscopic analysis of large molecular libraries."

By Siddharth Dhanpal, Peter Elliott, Paolo Emilio Trevisanutto, Alin M. Elena, Gilberto Teobaldi
arXiv AI
Sep 17

BOOM: Benchmarking Out-Of-distribution Molecular Property Predictions of Machine Learning Models

BOOM is a new benchmark for evaluating out‑of‑distribution (OOD) molecular property predictions in machine learning. It provides chemically‑informed tests across common property prediction tasks and assesses over 150 model‑task combinations. The study shows that current models, including chemical foundation models, struggle to generalize OOD, with the best model still exhibiting three times higher error than in‑distribution predictions.

By Evan R. Antoniuk, Shehtab Zaman, Tal Ben-Nun, Peggy Li, James Diffenderfer, Busra Sahin, Obadiah Smolenski, Everett Grethel, Tim Hsu, Anna M. Hiszpanski, Kenneth Chiu, Bhavya Kailkhura, Brian Van Essen