arXiv Computer Vision

Decoupled I/O-Dominant Pipelines for Large-Scale Whole-Slide Image Embedding Extraction

The paper introduces a decoupled, I/O-aware pipeline for extracting embeddings from large whole-slide images (WSIs). It splits the workflow into patch generation, parallel embedding inference, and sharded vector database ingestion, isolating data movement from compute to reduce I/O overhead. The resulting distributed vector database stores embeddings with rich metadata, enabling efficient filtering, retrieval, and downstream tasks such as classification and few-shot learning, especially in low-resource settings.

arXiv Computation and Language
Sep 23

Efficient Iterative Retrieval with Heterogeneous Batching

Orthrus is a serving system that performs heterogeneous batching of embedding and generative models within a single inference loop. It uses chunked embedding with incremental pooling and workload‑aware batch composition to unify conflicting computational patterns. Experiments on four A100 GPUs show that Orthrus improves throughput by 1.28×–4.52× and reduces p99 latency by up to 55.8% compared to baseline deployments.

By Dohyun Park, Hubertus Franke, Daniel G. Waddington, Swaminathan Sundararaman, Yongjoo Park
arXiv AI
Sep 10

FastE: Readout-Triggered Token Compression for LLM Embedding Inference

FastE is a training‑free, plug‑and‑play method that compresses token prefixes in large language model (LLM) embedding inference. It uses a shared fixed threshold on batch‑mean readout‑prefix alignment to decide when to compress and ranks prefix states by readout attention scores to keep the most important ones. Experiments on Qwen3‑Embedding models show that FastE can cut decoder‑backbone FLOPs by over 40% while preserving more than 99% of the original ranking quality across multiple benchmarks and tasks.

By Jinsong Shu, Jinyong Wen, Baokun Wang, Zhongle Xie, Lidan Shou, Weiqiang Wang, Gang Chen
arXiv AI
Aug 11

Simple Token-Efficient Vision-Language Model for Case-level Pathology Synoptic Report Generation

arXiv:2605. 30716v2 Announce Type: replace-cross Abstract: Generating clinically useful pathology reports for pathology cases from whole-slide images (WSIs) is challenging due to gigapixel resolution, long visual-token sequences, and the complexity of case-level reasoning, where a single case may contain multiple WSIs with heterogeneous tissues and ambiguous findings.

By Zhiyuan Yang, Jiahao Cheng, Vincent Quoc-Huy Trinh, Mahdi S. Hosseini
Hugging Face Trending Papers
Jul 26

PathSelect: Sequential Token Selection for Whole Slide Pathology

Gigapixel Whole-Slide Images (WSIs) present a fundamental computational bottleneck for vision-language models (VLMs) due to extreme sequence lengths. Existing approaches predominantly rely on spatial sampling or training-free pruning, which risk diluting weak but informative signals, leading to the loss of critical diagnostic evidence due to the spatially diffuse nature of pathological cues.

arXiv AI
6d ago

VisionWeave: Weaving Elastic Visual Representations as a Native Capability of MLLMs

VisionWeave introduces elastic visual representation weaving, a native capability for multimodal large language models that learns where and at what granularity to encode visual information. The method combines a gated spatial pooler for coarse representations with a granularity router that allocates content‑adaptive token usage, trained end‑to‑end on large‑scale data. Experiments on Qwen3.5‑4B and Qwen3.8‑27B show that VisionWeave can save 43.0% of tokens while preserving 98.9% of performance across eight benchmarks, and delivers significant throughput gains and latency reductions when deployed on the SGLang serving engine.

By Yuan Feng, Qize Yang, Ruizhe Chen, Sibo Song, Haolin He, Muzhi Zhu, Zihan Liu, Yunfei Chu, Xize Cheng, Yuxuan Wang, Jin Xu, Xike Xie
arXiv Machine Learning
1d ago

STAPLE: Static Sparse Upcycling of Pretrained Checkpoints via Embedding Modules

arXiv:2610.12599v1 Announce Type: new Abstract: Sparse computation can scale the parametric capacity of LLMs without proportionally increasing active computation, but pretraining sparse architectures...

By Ranajoy Sadhukhan, Euijin Hong, Sheng Cao, Zechun Liu, Shuowei Jin, Sha Li, Changlong Yu, Xin Liu, Qin Lu, Zhenyu Shi, Priyanka Nigam, Beidi Chen
arXiv AI
Sep 3

NeoMME: A Single-Tower Multimodal-Native Multilingual Foundation Encoder for Efficient Fine-Tuning and Inference

NeoMME is a family of 260M and 800M‑parameter multimodal‑native multilingual encoders that process text and raw image patches in a single bidirectional Transformer. Trained from scratch with a masked discrete‑diffusion objective conditioned on visible image patches, NeoMME supports a 16,384‑token context, enabling encoding of up to two 4K UHD images. In downstream tests, NeoMME‑Retriever models outperform all sub‑800M‑parameter baselines on the ViDoRe v3 benchmark and achieve twice the throughput of ColModernVBERT on an NVIDIA L40S, while hierarchical token pooling and asymmetric quantization compress embeddings 255× with minimal loss in retrieval performance.

By Aur\'elien Lac, Tony Wu