arXiv:2507. 14267v2 Announce Type: replace Abstract: Large language model (LLM) agents can execute long-horizon scientific workflows, but their numerical outputs are difficult to trust: agents lose context, game verification checks, and can produce large volumes of plausible yet invalid results.
By Ziqi Wang, Hongshuo Huang, Hancheng Zhao, Changwen Xu, Shang Zhu, Jan Janssen, Venkatasubramanian Viswanathan
arXiv:2605. 26179v2 Announce Type: replace-cross Abstract: Density functional theory (DFT) serves as the basis for computational discovery in materials science and chemistry, yet each calculation demands extensive human effort: adjusting algorithms when convergence stalls, revising plans when unexpected physics emerges, and inserting steps as intermediate results reshape the problem.
By Penghui Yang, Zhonghan Zhang, Yue Li, Xinrun Wang, Yanchen Deng, Yuhao Lu, Bijun Tang, Zheng Liu, Bo An
OpenAI4S is an open‑source scientific research agent that treats code as action and science as sessions, combining a persistent computing runtime with structured session management. It uses tool calls for orchestration, executes code cells in persistent Python and R kernels, and records an append‑only Action Ledger, per‑cell execution logs, versioned artifacts, environment snapshots, and workspace checkpoints to preserve provenance and enable session recovery, branching, and extension. Evaluated on 36 research scenarios—including retrosynthesis, molecular dynamics, and protein design—OpenAI4S achieved a higher overall score (7.83) than a general‑purpose coding harness, especially on long‑horizon, computation‑intensive workflows, though reproducibility remains an open challenge.
whyItMatters":"The system demonstrates that persistent execution coupled with session‑level provenance can enhance the reliability of AI‑assisted scientific workflows, as evidenced by its superior performance across diverse research scenarios."
By Gongbo Zhang, Hao Li, Yu Wang, Mujie Lin, Liuzhenghao Lv, Yicheng Mao, Yimi Wang, Jun Zhu, Minhan Tang, Zhengxiang Jiang, Yusong Wang, Jiayu Yao, Kunpeng Ning, Dawei Pang, Yonghong Tian, OpenAI4S Community, Yuyang Liu, Li Yuan
arXiv:2606. 06523v1 Announce Type: new Abstract: Equipping Large Language Models (LLMs) to execute reliable multi-step workflows has become a central challenge in artificial intelligence.
By Ruida Wang, Jerry Huang, Pengcheng Wang, Xuanqing Liu, Luyang Kong, Tong Zhang
MatOS is an agent operating system designed to streamline materials research by organizing data, knowledge, tools, and workflows into reusable assets. It features a layered scientific asset graph, a stateful adaptive workflow that tracks and resumes tasks, and an evidence-driven asset evolution mechanism that updates assets based on execution records and user feedback. In benchmark tests, MatOS outperforms existing agents and has successfully narrowed millions of candidate structures to a few promising solid-electrolyte and halide variants, demonstrating its effectiveness in long, multistage materials studies.
By Dingyang Lyu, Jing Gao, Zhonghao Chang, Jingjie Huang, Xiangran Cheng, Xin He, Yongda Huang, Zefeng Li, Jiahui Liu, Jian Wen, Feng Yu, Bonan Zhu, Yongheng Li, Hongwei Du, Baole Wei, Ziheng Lu
The paper introduces Pufibara, an agent harness designed to maintain engineering state and evidence across revisions in Modelica-based physical system modeling. It also presents a 232-task Modelica Agent Workflow Benchmark covering model repair, generation, and tuning, evaluated by an external benchmark-owned evaluator. Experiments show Pufibara outperforms Claude Code in task success and resource efficiency across two LLM backends.
By Zizhe Wang
arXiv:2607. 20499v1 Announce Type: new Abstract: Large Language Models generate plausible backend code, but a single-pass paradigm provides no guarantee of correctness or runtime reliability.
By Sai Deekshith Lekkala, Jothi Prabha Appadurai, Rohith Reddy Bellibatlu, Manpreet Singh
arXiv:2512. 11935v2 Announce Type: replace Abstract: Agentic AI systems increasingly connect large language models (LLMs) to external scientific tools, yet whether and when tool access improves prediction accuracy remains uncharacterized.
By Jaehyung Lee, Justin Ely, Kent Zhang, Akshaya Ajith, Charles Rhys Campbell, Kamal Choudhary
arXiv:2609.24165v1 Announce Type: new
Abstract: Synchrotron data reduction, detector calibration followed by azimuthal integration of terabyte-scale diffraction series, is a multi-step, expert-bound...
By Pawan K. Tripathi, Hemant Sharma, Andrew Chuang, Mathew J. Cherukara
arXiv:2608. 12249v1 Announce Type: new Abstract: Modernizing legacy Fortran is a problem of volume: the transformations are individually routine, but the codebases can be enormous, and across much of computational science the work simply goes undone.
By Yuzhong Shen, Masha Sosonkina, Peng Xu, Mark S. Gordon
arXiv:2607. 09789v1 Announce Type: new Abstract: We introduce PHITSBench, an execution-scored benchmark for the Monte Carlo Particle and Heavy Ion Transport code System (PHITS).
By Xianglin Ji, Svetlana V. Boriskina
arXiv:2609.12533v1 Announce Type: cross
Abstract: Real-world Earth observation (EO) agents must translate high-level scientific questions into executable workflows to acquire observations, prepare da...
By Zhutao Lv, Chenhao Dang, Yi Feng, Yanpei Gong, Xiaolei Wang, Junyan Ye, Conghui He, Weijia Li