Hugging Face Trending Papers

JAREX: An Acquisition Function for Multi-Objective Algorithmic Process Characterization

arXiv Machine Learning
Sep 22

JAREX: An Acquisition Function for Multi-Objective Algorithmic Process Characterization

JAREX is a Bayesian active‑learning acquisition function designed for multi‑objective process characterization in pharmaceutical manufacturing. It treats characterization as a joint boundary‑learning problem, adaptively selecting experiments to delineate the joint pass region where multiple quality thresholds are simultaneously met. Benchmarks show that JAREX outperforms factorial design of experiments, space‑filling designs, and greedy strategies, achieving more accurate and sample‑efficient boundary recovery, and halving the number of experiments needed for batched runs while maintaining high accuracy.

By Xinyang Li, Kevin Stone, Ajit Vikram
Hugging Face Trending Papers
Jun 17

A Human-in-the-Loop Bayesian Optimization Framework for Constraint-Aware Bioprocess Development

This work presents an extension to Pareto Front Guided Sampling (PFGS), a Human-in-the-Loop (HitL) Bayesian Optimization (BO) framework in which Gaussian process (GP) surrogate-derived quantities are reformulated as objectives of a multi-objective optimization problem, and the resulting Pareto front is exposed to a domain expert for interactive candidate selection rather than returning a single automated recommendation. The framework is extended in two directions: constrained optimization is addressed by incorporating the posterior probability of satisfying output specification limits as an explicit Pareto objective, computed analytically from the GP posterior distribution; robust optimization is addressed by a Monte Carlo sampling strategy that estimates expected lower-confidence performance over a user-defined variability of input perturbations, capturing performance degradation under likely implementation deviations.

arXiv Machine Learning
Jun 26

Bayesian Optimization for General Reaction Conditions

arXiv:2502. 18966v2 Announce Type: replace Abstract: General chemical reaction conditions that achieve consistently high performance across multiple substrates are important for practical applications such as library synthesis and high-throughput experimentation.

By Stefan P. Schmid, Ella Miray Rajaonson, Cher Tian Ser, Mohammad Haddadnia, Shi Xuan Leong, Al\'an Aspuru-Guzik, Agustinus Kristiadi, Kjell Jorner, Felix Strieth-Kalthoff
arXiv Machine Learning
Jun 18

A Human-in-the-Loop Bayesian Optimization Framework for Constraint-Aware Bioprocess Development

arXiv:2606. 19230v1 Announce Type: new Abstract: This work presents an extension to Pareto Front Guided Sampling (PFGS), a Human-in-the-Loop (HitL) Bayesian Optimization (BO) framework in which Gaussian process (GP) surrogate-derived quantities are reformulated as objectives of a multi-objective optimization problem, and the resulting Pareto front is exposed to a domain expert for interactive candidate selection rather than returning a single automated recommendation.

By Samuel Stricker, Claus Wirnsperger, Alessandro Butt\'e, Laura Helleckes, Gonzalo Guill\'en Gos\'albez, Antonio del Rio Chanona, Mehmet Mercang\"oz
arXiv AI
Aug 6

Out-Of-The-Loop Multi-Fidelity Bayesian Optimization

arXiv:2608. 04113v1 Announce Type: cross Abstract: Black-box optimization is a ubiquitous problem in science and engineering, often dealing with expensive objective functions with cheaper lower-fidelity proxies available.

By Gustavo Sutter, Hao Wang, Luis Ricardez-Sandoval, Pascal Poupart, Agustinus Kristiadi