arXiv Machine Learning

From topology learning to graph generation: A unifying perspective

arXiv Machine Learning
Aug 20

GraphK: Variable-Size Graph Generation with Efficient Edge Construction

GraphK introduces an encoder‑sampler‑decoder framework that generates variable‑size graphs efficiently. It learns permutation‑invariant latent representations and samples new node embeddings via maximum likelihood, enabling both upscaling and downscaling of graph size. Edge construction uses KDTree‑based top‑k neighbor search in latent space, reducing computational cost while capturing graph properties.

By Resul Tugay, Eren Olu\u{g}, Elif Ak, Sule Gunduz Oguducu
arXiv AI
Jul 28

A Survey of Graph Transformers: Architectures, Theories and Applications

arXiv:2502. 16533v3 Announce Type: replace-cross Abstract: Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-smoothing and over-squashing.

By Chaohao Yuan, Kangfei Zhao, Ercan Engin Kuruoglu, Liang Wang, Tingyang Xu, Wenbing Huang, Deli Zhao, Hong Cheng, Yu Rong
arXiv Machine Learning
Jul 23

Geometry-Guided Generative Representation for Functional Brain Graphs

arXiv:2511. 04539v2 Announce Type: replace-cross Abstract: In network neuroscience, functional brain systems are often characterized using separate yet related graph-theoretic or spectral descriptors, overlooking how these properties covary and partially overlap across individuals and conditions.

By Subati Abulikemu, Tiago Azevedo, Michail Mamalakis, John Suckling