OgBench: A Framework for Evaluating Graph Neural Networks on Omics Data
arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.
arXiv:2606. 07700v1 Announce Type: cross Abstract: Background: Prediction of essential genes (proteins), is a basic and challenging problem but at the same time very costly and time-consuming in wet-lab experiments.
arXiv:2605. 15511v2 Announce Type: replace Abstract: Graph Neural Networks (GNNs) have become the dominant framework for inductive graph-level learning.
arXiv:2607. 03587v1 Announce Type: new Abstract: We propose NetinfoGC, a framework for graph classification that extends the Network Usable Information (NUI) paradigm to graph-level learning.
arXiv:2508. 08005v4 Announce Type: replace-cross Abstract: The Maximum Clique Problem (MCP) is an NP-hard problem with wide-ranging applications in fields such as bioinformatics, network science, and social computing, yet no single algorithm consistently outperforms all others across diverse graph instances.
arXiv:2608. 04381v1 Announce Type: cross Abstract: Self-supervised learning on graphs is largely shaped by contrastive methods that depend on carefully designed augmentations, and by generative methods that reconstruct node attributes in the input space.
arXiv:2507. 10005v2 Announce Type: replace Abstract: In recent years, graph-based machine learning techniques, such as reinforcement learning and graph neural networks, have garnered significant attention.
arXiv:2607. 09372v1 Announce Type: new Abstract: Graph Neural Networks (GNNs) provide a learning-based framework for approximating graph quantities that are expensive to compute exactly.
arXiv:2606. 24978v1 Announce Type: new Abstract: Accurate particulate matter (PM) prediction is crucial for mitigating air pollution.
arXiv:2602. 20573v3 Announce Type: replace Abstract: Molecules are often represented as SMILES strings, which can be readily converted to hand-crafted descriptors or fingerprints (FP) for molecular property prediction.
arXiv:2607. 01627v1 Announce Type: cross Abstract: Accurate protein-protein interaction (PPI) prediction is central to functional genomics, disease mechanism discovery, and drug development.
arXiv:2606. 06364v1 Announce Type: new Abstract: Subgraph detection seeks to identify whether and where instances of query patterns occur within a larger graph.
arXiv:2607. 26404v1 Announce Type: new Abstract: Graph Neural Networks (GNN) facilitate effective prediction on graph data such as molecules, media networks and neural network blueprints.
arXiv:2503. 22939v4 Announce Type: replace Abstract: The integration of heterogeneous multi-omics datasets at a systems level remains a central challenge for developing analytical and computational models in precision cancer diagnostics.