arXiv:2606. 01374v3 Announce Type: replace Abstract: Observable performance is commonly used to characterize biological systems, yet aggregated outputs may remain insufficient for uniquely resolving observational conditions, and richer multivariate representations may retain substantial ambiguity.
By Jacques Raynal, Pierre Slangen, Elsa Raynal, Jacques Margerit
arXiv:2606. 07303v1 Announce Type: new Abstract: Representation learning is central to modern machine learning, enabling transitions from handcrafted features to learned embeddings, latent spaces, foundation models, world models, and digital twins.
By Jacques Raynal, Pierre Slangen, Elsa Raynal, Jacques Margerit
arXiv:2605. 00778v2 Announce Type: replace Abstract: In biomechanical systems, observable performance is often used as a proxy for underlying organization, although similar outputs may arise from different adaptive configurations.
By Jacques Raynal, Pierre Slangen, Elsa Raynal, Jacques Margerit
arXiv:2605. 15862v2 Announce Type: replace Abstract: Understanding adaptive biomechanical systems requires distinguishing observable performance, static multivariate representation, longitudinal displacement, and internal approximation of observed change.
By Jacques Raynal, Pierre Slangen, Elsa Raynal, Jacques Margerit
arXiv:2605. 15995v2 Announce Type: replace-cross Abstract: Learning latent representations from complex data is central to modern machine learning, spanning temporal, multimodal, and partially observed systems.
By Gwenol\'e Quellec
arXiv:2607. 01838v1 Announce Type: new Abstract: Counterfactual explanations (CEs) for multivariate time-series classifiers are often difficult to interpret in domains where experts reason in terms of semantic feature groups rather than individual channels.
By Emmanuel C. Chukwu, Rianne M. Schouten, Monique Tabak, Mykola Pechenizkiy
arXiv:2607. 28567v1 Announce Type: cross Abstract: Longitudinal causal studies often record histories as irregular functional fragments: laboratory values, physiologic signals, sensor streams, and image-derived summaries measured at unequal and informative times.
By Mengfei Ran, Yifeng Shen, Ruijie Guan
arXiv:2605. 10840v3 Announce Type: replace-cross Abstract: We present Clin-JEPA, a multi-phase co-training framework for joint-embedding predictive (JEPA) pretraining on EHR patient trajectories.
By Yixuan Yang, Mehak Arora, Ryan Zhang, Baraa Abed, Junseob Kim, Tilendra Choudhary, Md Hassanuzzaman, Kevin Zhu, Ayman Ali, Chengkun Yang, Alasdair Edward Gent, Victor Moas, Rishikesan Kamaleswaran
Counterfactual explanations (CEs) for multivariate time-series classifiers are often difficult to interpret in domains where experts reason in terms of semantic feature groups rather than individual channels. In rehabilitation movement analysis with multi-sensor inertial measurement units (IMUs), clinicians interpret motion through muscle-group and joint-segment abstractions; yet, most existing counterfactual methods operate at the channel level, producing scattered and biomechanically incoherent explanations.
arXiv:2604. 27967v2 Announce Type: replace Abstract: Background: We introduce StructGP, a continuous-time multi-task Gaussian process that couples process convolutions with differentiable structure learning to uncover a sparse, ordered directed acyclic graph (DAG) of inter-variable dependencies while preserving principled uncertainty.
By Ivan Lerner, Jean Feydy, Alexandre Kalimouttou, Anita Burgun, Francis Bach
arXiv:2608. 06122v1 Announce Type: cross Abstract: Inspired by recent evidence that transformer architectures benefit from Self-PreTraining (SPT) on long-context benchmarks, we investigate whether similar gains extend to multimodal, multivariate, and even simple univariate medical time series.
By Omar Coser, Antonio Orvieto, Paolo Soda, Loredana Zollo
arXiv:2606. 31126v1 Announce Type: new Abstract: Predicting biomolecular properties from limited labeled data is a central bottleneck in protein engineering and small-molecule design.
By Davy Guan, Lu Zhang, Asiri Wijesinghe, Allen Zhu, He Zhao, Helen Power, F. Hafna Ahmed, Andrew Warden, Cheng Soon Ong, Daniel M. Steinberg