arXiv AI

POSEIDON: Scaling Training Environments for Scientific Agents from Code Repositories

POSEIDON is an automated pipeline that generates diverse, verifiable training environments from scientific code repositories, scaling up the number of environments by nearly tenfold compared to previous methods. It decomposes scientific workflows into four task types—Reproduction, Subflow, Completion, and Correction—to target distinct scientific research capabilities, and uses a recursive improvement loop to refine and recover environments. Using Poseidon, the authors created Pearl, a collection of 97,659 executable and verifiable environments from 7,110 public repositories across ten scientific disciplines, the largest multidisciplinary set to date, which enabled Qwen3.5 models to achieve consistent gains on six scientific-agent benchmarks.

arXiv Computation and Language
Sep 17

ScienceIDE: Turning World's Scientific Codebase into Agent Learnable Environments

arXiv:2609.19134v1 Announce Type: new Abstract: Scientific code repositories encode decades of human knowledge in executable models, methods, and tools. Yet fragmented toolchains, implicit domain con...

By Hejia Geng, Zesen Huang, Haoyang Li, Wenbin Li, Koutian Wu, Zihan Zhou, Yuanbo Pang, Weihao Liu, Zigong Xu, Zhiping Li, Zongzheng Zhang, Chuanfei Dong, Jiankai Sun, Tianzhe Zheng, Fengyu Xie, Yue Ma, Yueheng Shi, Tong Xie, Zonglin Di, Xianrong Liu, Qucheng Gao, Yimin Liu, Jiaming Pan, Sheng Huang, Xiao-Han Ma, Lanqing Yuan, Zhenlin Zhu, Ziang Liu, Ziyang Xu, Junkai Wang, Kangkai Liang, Jiayi Xian, Zehong Zhao, Liuwei Xu, Jingxu Xie, Peijin Zhang, Qiang Gao, Chengyi Xing, Zhe Zhao, Xi Wang, Yaopeng Xing, Xing Meng, Zhenfei Yin, Yingcheng Wu, Ling Yang
arXiv Machine Learning
Aug 31

D3-Gym: Constructing Real-World Verifiable Environments for Data-Driven Discovery

D3‑Gym is the first automatically constructed dataset that provides verifiable environments for scientific data‑driven discovery, comprising 565 tasks from 239 real scientific repositories across four disciplines. Each task includes a natural‑language instruction, an executable environment with pre‑installed dependencies, dataset previews, a reference solution, and an automatically synthesized evaluation script that achieves 87.5% agreement with human‑annotated gold standards. Training on trajectories sampled from D3‑Gym consistently improves Qwen3 models on ScienceAgentBench, and the platform also serves as a testbed for studying agentic optimization loops such as Autoresearch on real scientific workflows.

By Hanane Nour Moussa, Yifei Li, Zhuoyang Li, Yankai Yang, Cheng Tang, Tianshu Zhang, Nesreen K. Ahmed, Ali Payani, Ziru Chen, Huan Sun
arXiv AI
Jul 14

FIRE-Bench: Evaluating AI Agents on the Rediscovery of Scientific Insights

arXiv:2602. 02905v2 Announce Type: replace Abstract: Autonomous agents powered by large language models (LLMs) promise to accelerate scientific discovery end-to-end, but rigorously evaluating their capacity for verifiable discovery remains a central challenge.

By Zhen Wang, Fan Bai, Zhongyan Luo, Jinyan Su, Kaiser Sun, Xinle Yu, Jieyuan Liu, Kun Zhou, Claire Cardie, Mark Dredze, Zhiting Hu, Eric P. Xing
arXiv AI
Jun 12

Benchmarking AI Agents for Addressing Scientific Challenges Across Scales

arXiv:2606. 12736v1 Announce Type: new Abstract: AI agents are increasingly being developed to accelerate scientific discovery, yet their practical capabilities in real research settings remain poorly understood.

By Tianyu Liu, Allen Xin Wang, Antonia Panescu, Lisa Xinyi Chen, Wenxin Long, Xinyu Wei, Yueqian Jing, Ziyao Zeng, Jihang Chen, Sihan Jiang, Ziqing Wang, Siyi Gu, Siyu Chen, Xinyang Hu, Haoran Shao, Leqi Xu, Wangjie Zheng, Zhiyuan Cao, Ada Fang, Botao Yu, Kunyang Sun, Rex Ying, Arman Cohan, Qingyu Chen, Lingzhou Xue, Kaize Ding, Yuanqi Du, Wengong Jin, Zhuoran Yang, Marinka Zitnik, James Zou, Hua Xu, Hongyu Zhao
arXiv Computation and Language
Oct 9

SAIL: Scientific Agentic Intelligence via a Science-Aware Loop

SAIL is an open model with 35 B total and 3 B active parameters designed for literature research, scientific coding, and multi‑step research workflows. It is developed through a science‑aware improvement loop in which agents built on frontier AI models analyze task failures, create training tasks to address capability gaps, and iterate this process across multiple development cycles. The training pipeline combines supervised fine‑tuning, specialist training, multi‑teacher on‑policy distillation, and agentic reinforcement learning, enabling SAIL to achieve competitive performance on scientific research tasks with fewer parameters than leading open‑weight models.

By SAIL Model Team, Boyuan Sun, Bryan Dai, Che Liu, Chi Liu, Derek Li, Hongming Piao, Mengzhuo Chen, Xidong Wang, Yan Shu, Yinda Chen, Ziyang Zeng
arXiv Computation and Language
Oct 26

SCI-AGENT-EXAM: Benchmarking Agents on Scientific Research Tasks

arXiv:2610.32441v1 Announce Type: new Abstract: Large language model (LLM) agents are increasingly capable of supporting scientific workflows, but their capabilities across diverse research activitie...

By Tianyun Zhong, Wei Wang, Jialin Li, Jianhong Tu, Liyao Li, Chuqiao Kuang, Tianshi Zheng, Songchi Zhou, Weiqi Zhai, Qile Jin, Jiajia Li, Jiasheng Zheng, Boxi Cao, Yaojie Lu, Hongyu Lin, Shiwei Ye, Bing Zhao, Hu Wei, Lin Qu, Xianpei Han
arXiv AI
Oct 21

Sage-A1.5: From Long-Horizon Execution to Scientific Exploration with Capability Composition

arXiv:2610.28578v1 Announce Type: new Abstract: In this report, we introduce Sage-A1.5, a 35B Mixture-of-Experts agentic model that builds on A1 to advance long-horizon problem solving through adapti...

By Wenjie Lou, Tianshuo Peng, Shiyang Feng, Shengji Tang, Runmin Ma, Ruizhe Chen, Jinxin Shi, Haoyang Peng, Fangchen Yu, Zhijie Zhong, Yuhao Zhou, Yue Fan, Yixin Chen, Yiming Wu, Yiheng Wang, Yigeng Jiang, Yichen Jiang, Yi Xie, Xu Guo, Xiaohan He, Tao Hu, Songtao Huang, Siyu Zhou, Shuaiyu Zhang, Shangheng Du, Qinglong Cao, Kun Li, Jingqi Ye, Hongbin Zhou, Guohang Yan, Zongsheng Cao, Ziyi Wang, Zhuo Liu, Zhiyin Yu, Zhiwang Zhou, Zelin Tan, Yuqing Zhu, Yaoze Zhang, Yang Chen, Xuming He, Xiuliang Liang, Xingjian Guo, Xiang Zhuang, Weiping Shen, Weida Wang, Tianyuan Zhou, Tianlin Ye, Tengyuan Fan, Siyu Yan, Shuo Li, Shuchen Pu, Shengyuan Xu, Shao Zhang, Ran Wei, Qinyuan Qin, Qingyu Yang, Nianchen Deng, Meng Dai, Kuikun Liu, Kaitao Chen, Juncheng Xiao, Jiangning Liu, Jianbiao Mei, Jia Yu, Haonan He, Hangfan Zhang, Cheng Yang, Chen Zhang, Bihao Zhan, Benteng Cheng, Yuqiang Li, Yihao Liu, Yang Yang, Xujun Fu, Xiaosong Wang, Xiangyu Yue, Wenwei Zhang, Shuyue Hu, Pinlong Cai, Mianxin Liu, Lei Bai, Jie Zhou, Jie Hou, Jiamin Wu, Hui Wang, Haijun Li, Guangyu Wang, Dongzhan Zhou, Chunfeng Song, Chao Yang, Biqing Qi, Xing Xie, Dahua Lin, Bowen Zhou, Xiangchao Yan, Wenlong Zhang, Shufei Zhang, Peng Ye, Bo Zhang
arXiv AI
Jun 9

EvoMaster: A Foundational Evolving Agent Framework for Agentic Science at Scale

arXiv:2604. 17406v3 Announce Type: replace Abstract: The convergence of large language models and agents is catalyzing a new era of scientific discovery: Agentic Science.

By Xinyu Zhu, Yuzhu Cai, Zexi Liu, Cheng Wang, Fengyang Li, Wenkai Jin, Wanxu Liu, Zehao Bing, Bingyang Zheng, Jingyi Chai, Shuo Tang, Rui Ye, Yuwen Du, Xianghe Pang, Yaxin Du, Tingjia Miao, Yuzhi Zhang, Ruoxue Liao, Zhaohan Ding, Linfeng Zhang, Yanfeng Wang, Weinan E, Siheng Chen
arXiv AI
Aug 28

Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research

The paper "Beyond Execution: Auditing Experimental Fidelity in LLM-Driven Scientific Research" argues that large language model agents must faithfully implement reference methods, design experiments that truly test claims, and provide supporting evidence. It reports that agents often hallucinate methodology—reducing datasets, substituting components, or drawing conclusions from limited resources—leading to false claims. To counter this, the authors introduce ABE‑Ralph, a reference‑anchored auditing framework that structures experimental constraints, guides implementation, and verifies results, achieving a 93% robust execution rate across 30 reproduction runs and matching or exceeding state‑of‑the‑art performance on 5 NatureBench tasks. "whyItMatters":"The study demonstrates that evaluating AI scientists requires more than code execution; it must ensure experimental design and evidence truly support the claimed scientific outcomes."

By Lezhi Yu, Xiaogang Xu, Yuhua Zhou, Shuibing He, Aimin Pan