The paper introduces AutoMat, a benchmark designed to test large language model (LLM) coding agents on their ability to reproduce claims from computational materials science. AutoMat presents three challenges: reconstructing underspecified procedures, navigating specialized toolchains, and assessing whether the evidence supports a claim. Experiments show that current LLM agents achieve low success rates, with the best setting reaching only 53%, and failures stem mainly from incomplete procedures, methodological deviations, and execution fragility.
By Ziyang Huang, Yi Cao, Ali K. Shargh, Jing Luo, Ruidong Mei, Mohd Zaki, Zhan Liu, Wyatt Bunstine, William Jurayj, Somdatta Goswami, Tyrel McQueen, Michael Shields, Jaafar El-Awady, Paulette Clancy, Benjamin Van Durme, Nicholas Andrews, William Walden, Daniel Khashabi
arXiv:2607. 05456v1 Announce Type: new Abstract: While recent advances in large language models have enabled end-to-end automated manuscript generation, existing systems suffer from three critical deficiencies: (i) generated claims are not deterministically grounded in verifiable literature, (ii) experimental results are frequently fabricated rather than executed, and (iii) there exists no standardized, multi-dimensional framework to assess whether AI-generated manuscripts meet the quality and rigor required for real-world publication.
By Ramsha Kamran, Maheera Amjad, Zartasha Mustansar, Arsalan Shaukat, Salma Sherbaz, Muhammad U. S. Khan
Autonomous scientific research agents are increasingly applied to end-to-end scientific workflows, including literature review, data analysis, experimentation, and report generation. However, open-end...
arXiv:2608.31076v1 Announce Type: cross
Abstract: Autonomous scientific research agents are increasingly applied to end-to-end scientific workflows, including literature review, data analysis, experi...
By Xuehai Wang, Haowei Qin, Tongxin Liu, Junkai Li, Buqiang Xu, Jintian Zhang, Yijun Chen, Zirui Xue, Shumin Deng
arXiv:2606. 07591v1 Announce Type: cross Abstract: AI coding agents are increasingly used for scientific work, but their end-to-end autonomous research capability remains difficult to verify.
By Wanghan Xu, Shuo Li, Tianlin Ye, Qinglong Cao, Yixin Chen, Hengjian Gao, Yiheng Wang, Qi Li, Kun Li, Sheng Xu, Shengdu Chai, Fangchen Yu, Xiangyu Zhao, Zhangrui Zhao, Weijie Ma, Zijie Guo, Haoyu Zhou, Haoxiang Yin, Lixue Cheng, Chaofan Hu, Haoxuan Li, Lu Mi, Xuxuan Xie, Yifan Zhou, Ruizhe Chen, Zhiwang Zhou, Xingjian Guo, Yuhao Zhou, Xuming He, Shengyuan Xu, Xinyu Gu, Jiamin Wu, Mianxin Liu, Chunfeng Song, Fenghua Ling, Dongzhan Zhou, Shixiang Tang, Yuqiang Li, Mao Su, Peng Ye, Siqi Sun, Bin Wang, Xue Yang, Zhenfei Yin, Tianfan Fu, Guangtao Zhai, Wanli Ouyang, Bo Zhang, Lei Bai, Wenlong Zhang
arXiv:2609.22111v1 Announce Type: new
Abstract: Large language model agents are increasingly capable of conducting research autonomously, producing research documents alongside the code and experimen...
By Qiuhong Shen, Benlong Wu, Hanjin Liu, Yuang Qi, Kejiang Chen
AutoResearch is a two‑stage autonomous research system that links Idea Generation with Idea Execution. In the generation phase it blends new research signals with existing domain knowledge, identifies transferable mechanistic insights, and produces grounded, testable research plans through multi‑model generation and cross‑review. The execution phase then decomposes these plans into experiments, iteratively implements and diagnoses them, and uses independent evidence‑based review to accept or revise conclusions, thereby turning ideas into measurable progress while minimizing hallucinations.
By Yiming Ren, Xiang Liu, Qumeng Sun, Xiao Zhang, Jiahao Li, Haoyang Zhang, Junjie Wang
The paper audits silent failures in agent-to-tool interactions within the ToolUniverse environment, focusing on 15 scientific tools. It identifies 91 failures—primarily missing data or inconsistent search/filtering—occurring mainly in the API and wrapper layers, and shows how these silent failures can propagate downstream into seemingly valid outputs. The authors propose contextual reliability and recommend testing, disclosure, monitoring, and measurement strategies for the agent-tool pipeline.
By Shreya Gopalan, Devansh Singh, Sundaraparipurnan Narayanan
arXiv:2606. 21005v2 Announce Type: replace Abstract: Scientific discovery workflows often depend on structured curation from the literature.
By Sheng Zhang, Qin Liu, Renqian Luo, Shufang Xie, Reuben Tan, Sean Hayes, Gregory Bryman, Wendong Ge, Ruilian Zhang, Oluwaseun Egbelowo, Kelly Yee, Hoifung Poon
arXiv:2608. 05179v1 Announce Type: cross Abstract: Large language model (LLM) agents are increasingly used across the scientific research lifecycle: ideation, literature search, experiment design and execution, analysis, manuscript drafting, and review.
By Tianyu Ding, Aditya Nannapaneni, Bingfan Liu, Ling Zhang
arXiv:2605. 18661v2 Announce Type: replace Abstract: AI-assisted research is crossing a threshold: fully automated systems can now generate research papers for as little as $15, while long-horizon agents can execute experiments, draft manuscripts, and simulate critique with minimal human input.
By Lingdong Kong, Xian Sun, Wei Chow, Linfeng Li, Kevin Qinghong Lin, Xuan Billy Zhang, Song Wang, Rong Li, Qing Wu, Wei Gao, Yingshuo Wang, Shaoyuan Xie, Jiachen Liu, Leigang Qu, Shijie Li, Lai Xing Ng, Benoit R. Cottereau, Ziwei Liu, Tat-Seng Chua, Wei Tsang Ooi
arXiv:2608. 10039v1 Announce Type: new Abstract: Agentic workflows have become an important abstraction for building reliable LLM-based automation systems by organizing large language models (LLMs), tools, and control logic into explicit execution structures.
By Shuo Hao, You Lu, Bihuan Chen, Xin Peng