arXiv Machine Learning

Learning Graph Energies for Finite-Time Generation

arXiv Machine Learning
Oct 8

Physics-Aligned Electronic Ground-State Learning Improves Generalization

The paper introduces Physics‑Aligned Electronic Ground‑State Models (GSMs) that sit between machine‑learned interatomic potentials and Kohn‑Sham density functional theory in terms of computational cost and accuracy. By aligning GSM learning objectives with KS‑DFT equations and enforcing physical constraints, the authors develop new training techniques—OrthoNormal‑Loss (ON‑Loss), Grassmann Restricted Occupied‑Orbital Training (GROOT), and Residual Optimal‑gauge Conditioning‑aware KS‑Eq. Training (ROCKET)—which dramatically reduce energy and force errors in size‑extrapolation tests from QM9 to QM40. The models also achieve near‑chemical‑accuracy predictions on reactive chemistry benchmarks and demonstrate efficient label‑free self‑consistency fine‑tuning. whyItMatters":"The work advances the cost‑accuracy frontier for electronic structure predictions, enabling more reliable out‑of‑distribution generalization in drug and material discovery."

By Eike S. Eberhard, Xaver Kainz, Viktor Kotsev, Abdulrahman Aldossary, Stephan G\"unnemann
arXiv Machine Learning
Jul 7

On the Design Space of Discrete Diffusion Online Adaptation for Molecular Optimization

arXiv:2607. 02834v1 Announce Type: new Abstract: Molecular optimization often starts from a pretrained generative model that captures a broad prior over valid molecular structures.

By Trevor Chen, Ariel Dai, Jason Yang, Riccardo De Santi, Daniel Khalil, Wenda Chu, Nate Gruver, Pranav Murugan, Alexander F. G. Goldberg, Maruan Al-Shedivat, Yisong Yue
arXiv Machine Learning
Sep 22

SPIBER: Reconstructing Free Energy Landscapes from Short, Unconverged Trajectories with Generative Flow Networks

arXiv:2609.22663v1 Announce Type: cross Abstract: Molecular systems have many degrees of freedom, but their metastable behavior can often be described by a few collective variables. Identifying these...

By Venkata Sai Sreyas Adury (Chemical Physics Program and Institute for Physical Science and Technology, University of Maryland), Pratyush Tiwary (Biophysics Program and Institute for Physical Science and Technology, University of Maryland, Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, University of Maryland Institute for Health Computing, Bethesda, USA)
arXiv Machine Learning
Sep 18

VGAS: Variance-Reduced Guidance and Adaptive Selection for Training-Free Reward Alignment in Discrete Diffusion

VGAS: Variance-Reduced Guidance and Adaptive Selection for Training-Free Reward Alignment in Discrete Diffusion proposes a new inference-time framework that improves steering of frozen masked discrete diffusion models. By reducing the variance of guidance estimates, applying reward tilting to clean-token logits, and adapting the selection temperature at each step, VGAS addresses three default choices in existing pipelines. Experiments on regulatory DNA, protein, and small-molecule benchmarks show that VGAS achieves the best training-free reward performance and matches or surpasses reward-fine-tuned generators.

By Kwanyoung Kim