arXiv:2603. 23398v3 Announce Type: replace-cross Abstract: Generative modeling of discrete data, such as graphs, underpins many scientific and industrial applications, including molecular discovery and materials design.
By Michal Balcerak, Suprosanna Shit, Chinmay Prabhakar, Sebastian Kaltenbach, Michael S. Albergo, Yilun Du, Bjoern Menze
arXiv:2607. 15682v1 Announce Type: new Abstract: Sampling from an unnormalized Boltzmann density requires proposals that move probability mass globally while retaining enough path-probability information for statistical correction.
By Moxian Qian
arXiv:2503. 14549v4 Announce Type: replace Abstract: Scientific generative models must turn tractable local decisions into globally correlated samples that respect physical constraints.
By Michael Chertkov, Hamidreza Behjoo, Sungsoo Ahn
arXiv:2503. 14549v3 Announce Type: replace-cross Abstract: How can a cheap but biased sequential, finite-horizon sampler over a discrete space be corrected so that its terminal output follows a prescribed Gibbs distribution?
By Michael Chertkov, Sungsoo Ahn, Hamidreza Behjoo
The paper introduces Physics‑Aligned Electronic Ground‑State Models (GSMs) that sit between machine‑learned interatomic potentials and Kohn‑Sham density functional theory in terms of computational cost and accuracy. By aligning GSM learning objectives with KS‑DFT equations and enforcing physical constraints, the authors develop new training techniques—OrthoNormal‑Loss (ON‑Loss), Grassmann Restricted Occupied‑Orbital Training (GROOT), and Residual Optimal‑gauge Conditioning‑aware KS‑Eq. Training (ROCKET)—which dramatically reduce energy and force errors in size‑extrapolation tests from QM9 to QM40. The models also achieve near‑chemical‑accuracy predictions on reactive chemistry benchmarks and demonstrate efficient label‑free self‑consistency fine‑tuning.
whyItMatters":"The work advances the cost‑accuracy frontier for electronic structure predictions, enabling more reliable out‑of‑distribution generalization in drug and material discovery."
By Eike S. Eberhard, Xaver Kainz, Viktor Kotsev, Abdulrahman Aldossary, Stephan G\"unnemann
Machine-learned interatomic potentials (MLIPs) excel at in-distribution tasks, accelerating drug and material development, yet they struggle to generalize out-of-distribution. We propose to push the c...
arXiv:2607. 02834v1 Announce Type: new Abstract: Molecular optimization often starts from a pretrained generative model that captures a broad prior over valid molecular structures.
By Trevor Chen, Ariel Dai, Jason Yang, Riccardo De Santi, Daniel Khalil, Wenda Chu, Nate Gruver, Pranav Murugan, Alexander F. G. Goldberg, Maruan Al-Shedivat, Yisong Yue
arXiv:2603. 10395v2 Announce Type: replace Abstract: Graph generation is a fundamental task with broad applications, such as drug discovery.
By Baoheng Zhu, Deyu Bo, Delvin Ce Zhang, Xiao Wang
arXiv:2610.08367v1 Announce Type: new
Abstract: Several discrete design tasks, such as molecular discovery, require diverse collections of useful candidates at low computational cost. High validity a...
By Marcus Vukojevic, Erik Nielsen, Veronica Lachi, Andrea Passerini, Giovanni Iacca
arXiv:2605. 02427v3 Announce Type: replace Abstract: A recurring pattern in "reasoning without training" is that base LLMs already assign non-trivial probability mass to correct multi-step solutions; the bottleneck is locating these modes efficiently at inference time.
By Tu Nguyen, Matthieu Zimmer, Rasul Tutunov, Xiaotong Ji, Haitham Bou Ammar
arXiv:2609.22663v1 Announce Type: cross
Abstract: Molecular systems have many degrees of freedom, but their metastable behavior can often be described by a few collective variables. Identifying these...
By Venkata Sai Sreyas Adury (Chemical Physics Program and Institute for Physical Science and Technology, University of Maryland), Pratyush Tiwary (Biophysics Program and Institute for Physical Science and Technology, University of Maryland, Department of Chemistry and Biochemistry and Institute for Physical Science and Technology, University of Maryland, University of Maryland Institute for Health Computing, Bethesda, USA)
VGAS: Variance-Reduced Guidance and Adaptive Selection for Training-Free Reward Alignment in Discrete Diffusion proposes a new inference-time framework that improves steering of frozen masked discrete diffusion models. By reducing the variance of guidance estimates, applying reward tilting to clean-token logits, and adapting the selection temperature at each step, VGAS addresses three default choices in existing pipelines. Experiments on regulatory DNA, protein, and small-molecule benchmarks show that VGAS achieves the best training-free reward performance and matches or surpasses reward-fine-tuned generators.
By Kwanyoung Kim